FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.749e-40
Identity = 90/224 (40.18%), Postives = 133/224 (59.38%), Query Frame = 1
Query:  115 MARRPDE-EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL-KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI----------YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPC 750
            MAR P   +YD L K++L+GDSGVGKS LL RFT + F     +TIG++F  + + V+G+ +K QIWDTAGQER+R ITSAYYRGA G +LVYD+T   +F NV  W++ +  HA  N+  +++GNK DL +  R V+    Q+ A+  G  F ETSA + ++VE+AF  +  ++           +++ ++ LS+ +P          +  G  S A  K  C
Sbjct:    1 MARIPGRPDYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPV--------RLTSGSPSPAQGKSCC 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.591e-40
Identity = 91/205 (44.39%), Postives = 125/205 (60.98%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ + V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A  NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF     +I        + SGE  P  +  G  I  G A+    + P
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL-----NKIESGELDPERM--GSGIQYGDAALRQLRSP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.591e-40
Identity = 91/205 (44.39%), Postives = 125/205 (60.98%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ + V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A  NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF     +I        + SGE  P  +  G  I  G A+    + P
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL-----NKIESGELDPERM--GSGIQYGDAALRQLRSP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.690e-40
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESK-STIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + + V+G  +K QIWDTAGQER+R++T AYYR A   LL+YDVT   +F+++  WL E+++HA  ++V+M++GNK D    RAV  EDA+  A+  GL F+ETSA   +NV+ AF  I  E+
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.000e-40
Identity = 81/178 (45.51%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  145 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            Y F++++IGDS VGKS L+ RFT   F   S  T+GV+F +R +++E G+ IK QIWDTAGQER+R+IT AYYR ++G LL++D+T   +F+NV  WL+E + H     IV +++G+K DL   R V   +A+  A   G+ +IETSA +AINVEKAF  +  +IY ++ +  ++  E
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQE 184          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.000e-40
Identity = 81/178 (45.51%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  145 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            Y F++++IGDS VGKS L+ RFT   F   S  T+GV+F +R +++E G+ IK QIWDTAGQER+R+IT AYYR ++G LL++D+T   +F+NV  WL+E + H     IV +++G+K DL   R V   +A+  A   G+ +IETSA +AINVEKAF  +  +IY ++ +  ++  E
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQE 184          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.000e-40
Identity = 81/178 (45.51%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  145 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            Y F++++IGDS VGKS L+ RFT   F   S  T+GV+F +R +++E G+ IK QIWDTAGQER+R+IT AYYR ++G LL++D+T   +F+NV  WL+E + H     IV +++G+K DL   R V   +A+  A   G+ +IETSA +AINVEKAF  +  +IY ++ +  ++  E
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQE 184          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.000e-40
Identity = 89/205 (43.41%), Postives = 125/205 (60.98%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG++G GKS LL +F   +F  +S  TIG+EF ++ + V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A  NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF     +I        + SGE  P  +  G  I  G A+    + P
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKIL-----NKIESGELDPERM--GSGIQYGDAALRQLRSP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 77/187 (41.18%), Postives = 124/187 (66.31%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            D+ +D+LFK++LIGDS VGK+ ++ RF    F    ++TIGV+F  R + + G+ +K Q+WDTAGQER+R IT +YYR A GA++ YD+T+  +FE+V  W+ E   +  +N+++M+IGNK+DL   R +  E+A + AE+ G L+ +ETSA E+ NV++ F  +  E   +I++ +      +P N
Sbjct:    9 DDPFDFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKE---LIARNTFHYHSESPRN 192          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.782e-39
Identity = 78/166 (46.99%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESK-STIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + L V+G  +K QIWDTAGQER+R++T AYYR A   LL+YD+T   +F+N+  WL E++++A  ++V+M++GNK D    R V  ED +  A+  GL F+ETSA   +NV+ AF  I  E+
Sbjct:   61 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKEL 226          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV2_VOLCA2.749e-4040.18GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB4A_HUMAN3.591e-4044.39Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN3.591e-4044.39Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB26_BOVIN4.690e-4048.19Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RB39B_MOUSE8.000e-4045.51Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN8.000e-4045.51Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
RB39B_BOVIN8.000e-4045.51Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]
RAB4A_MOUSE8.000e-4043.41Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB19_XENTR1.365e-3941.18Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RAB26_RAT1.782e-3946.99Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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