FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.328e-39
Identity = 90/205 (43.90%), Postives = 123/205 (60.00%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG++G GKS LL +F    F  +S  TIGVEF ++ + V  + +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A  NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF     +I        + SGE  P  +  G  I  G A+    + P
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL-----NKIESGELDPERM--GSGIQYGDAALRQLRSP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.040e-39
Identity = 78/166 (46.99%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESK-STIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + L V+G  +K QIWDTAGQER+R++T AYYR A   LL+YD+T   +F+N+  WL E++++A  ++V+M++GNK D    R V  ED +  A+  GL F+ETSA   +NV+ AF  I  E+
Sbjct:   64 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKEL 229          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.040e-39
Identity = 78/166 (46.99%), Postives = 110/166 (66.27%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESK-STIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + L V+G  +K Q+WDTAGQER+R++T AYYR A   LL+YDVT   +F+N+  WL E+ ++A  ++ +M++GNK D  H R V  ED +  A+  GL F+ETSA   +NV+ AF  I  E+
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 81/191 (42.41%), Postives = 127/191 (66.49%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQT 705
            ++Y++LFK + +GDSGVGKS++L RFT + F     STIGV+F  +T+ +EG+ IK QIWDTAGQER+R   ++ YRG    ++VYDVT   +FENV++W++E+  +A  N++ M+IGNK+D+   + V    AQ +A+   ++F ETSA +AIN+E AF +++      I +   SS   +   +K+ Q+
Sbjct:    3 KKYEHLFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEEFKPSSTSSSTIILKKPQS 193          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 91/204 (44.61%), Postives = 126/204 (61.76%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG-GASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A  NIVI + GNK DL   RAV  +DAQ+YA+   L F+ETSA  A+NV        +EI+  I+KK L   EP  +    G+  VV    S   ++  CCS+
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNV--------NEIFMAIAKK-LPKNEPQNAPGGPGRNRVVDLQESSQPSRSQCCSN 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 82/208 (39.42%), Postives = 125/208 (60.10%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            D+ +DY+FK++LIG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V  W  +++ ++  N  ++++GNK DL+  R V  ED +  A+  G  F E SA E INV++ F+ ++     +I +K   S EP+ S+   G+   VG A         C
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD----VICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC 219          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 75/190 (39.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 699
            D+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I   +S +SL + +PA +  K+G
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS-ESLDTADPAVTGAKQG 204          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 75/190 (39.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 699
            D+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I   +S +SL + +PA +  K+G
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS-ESLDTADPAVTGAKQG 204          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 75/190 (39.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 699
            D+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I   +S +SL + +PA +  K+G
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS-ESLDTADPAVTGAKQG 204          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 75/190 (39.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 699
            D+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I   +S +SL + +PA +  K+G
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS-ESLDTADPAVTGAKQG 204          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_DANRE2.328e-3943.90Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB26_MOUSE3.040e-3946.99Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB26_HUMAN3.040e-3946.99Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RABA_DICDI3.970e-3942.41Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB5C_CHICK3.970e-3944.61Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB3D_HUMAN3.970e-3939.42Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3A_RAT3.970e-3939.47Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG3.970e-3939.47Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE3.970e-3939.47Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA3.970e-3939.47Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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