FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 75/190 (39.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 699
            D+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I   +S +SL + +PA +  K+G
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS-ESLDTADPAVTGAKQG 204          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 75/190 (39.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 699
            D+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I   +S +SL + +PA +  K+G
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS-ESLDTADPAVTGAKQG 204          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 77/187 (41.18%), Postives = 125/187 (66.84%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            D+ +D+LFK++LIGDS VGK+ ++ RF    F    ++TIGV+F  R+L + G+ +K Q+WDTAGQER+R IT +YYR A GA++ YD+T+  +FE+V  W+ E   +  +N+++M++GNK+DL   R +  E+A + AE+ G L+ +ETSA E+ NV++ F  +  E   +I++ +      +P N
Sbjct:    9 DDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKE---LIARNTFHYHNESPRN 192          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 5.185e-39
Identity = 85/202 (42.08%), Postives = 122/202 (60.40%), Query Frame = 1
Query:  148 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            +FK++LIGDS VGK++LL RF  N F   S +   V++  + + ++GRT   QIWDTAGQER+R ITS++YRGA G L+ YDVT   T+ NV  W++E++ +A   +  +++GNK DL+  + V T  A+ YA+  G+ F+E SA   +NVE+AF  + +EIYR         G   PS +  G     GG S    KK  C
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYR------NHMGGSKPSVVNPGS----GGTSNTGGKKKFC 197          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.185e-39
Identity = 84/208 (40.38%), Postives = 132/208 (63.46%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL------SSGEPAPSNIKEGQTIVVGGASEANT 738
            ++YD LF+++LIGDSGVGK+ LL RFT NEF     STIGV+F  +T++V+G  ++ QIWDTAGQERY+ IT  YYR A G  LVYD++   +++++ +W+ ++ ++A   +  ++IGNK D +  R V  E  Q  A+  G+ F ETSA   +N++++F T L+E+     +K L      +S E A + ++E +    G A+ + T
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF-TRLTELVLQAHRKELDGLRTCASNELALAELEEDEGKTEGPANSSKT 209          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.772e-39
Identity = 90/204 (44.12%), Postives = 126/204 (61.76%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG-GASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV        +EI+  I+KK L   EP  +    G+T  V    S   ++  CCS+
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKK-LPKNEPQNAAGAPGRTRGVDLQESNPASRSQCCSN 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.155e-38
Identity = 82/209 (39.23%), Postives = 131/209 (62.68%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEAN-TKKP 747
            +PD+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + +K QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F +V  W  +++ ++  N  ++++GNK D+   R V+ +  +  A++ GL F ETSA E INV+  F+    ++  II  K   S +  P    +GQ +      EAN T+KP
Sbjct:   14 QPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFE----KLVEIICDKMAESLDKDPQQQPKGQKL------EANPTQKP 212          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.155e-38
Identity = 74/183 (40.44%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +T+++ G  +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +A + ++ +++GNK DL   R V+ + A+ ++E + + ++ETSA E+ NVEK F  +   +     + +L +   +P
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.155e-38
Identity = 74/183 (40.44%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +T+++ G  +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +A + ++ +++GNK DL   R V+ + A+ ++E + + ++ETSA E+ NVEK F  +   +     + +L +   +P
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.155e-38
Identity = 74/183 (40.44%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +T+++ G  +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +A + ++ +++GNK DL   R V+ + A+ ++E + + ++ETSA E+ NVEK F  +   +     + +L +   +P
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_HUMAN3.970e-3939.47Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN3.970e-3939.47Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB19_XENLA3.970e-3941.18Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RABG2_DICDI5.185e-3942.08Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB15_RAT5.185e-3940.38Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB5C_MOUSE6.772e-3944.12Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB3_CAEEL1.155e-3839.23Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB30_MOUSE1.155e-3840.44Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.155e-3840.44Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.155e-3840.44Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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