FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.155e-38
Identity = 84/208 (40.38%), Postives = 132/208 (63.46%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL------SSGEPAPSNIKEGQTIVVGGASEANT 738
            ++YD LF+++LIGDSGVGK+ LL RFT NEF     STIGV+F  +T++V+G  ++ QIWDTAGQERY+ IT  YYR A G  LVYD++   +++++ +W+ ++ ++A   +  ++IGNK D +  R V  E  Q  A+  G+ F ETSA   +N++++F T L+E+     +K L      +S E A + ++E +    G A+ + T
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF-TRLTELVLQAHRKELEGLRMRASNELALAELEEEEGKPEGPANSSKT 209          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.509e-38
Identity = 77/173 (44.51%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 654
            EYD L K+++IGDSGVGKS +L RF  N F     STIGV+F  RT++++G+ IK QIWDTAGQER++ IT++YYRGA G ++VYD+T   +F ++ RWL ++   A  +++ +++GNK DL   RAV  + A+ +A+   +  +ETSA E+  +++AF  + S+I +   +K
Sbjct:   29 EYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKKSTPQK 201          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.509e-38
Identity = 84/208 (40.38%), Postives = 131/208 (62.98%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL------SSGEPAPSNIKEGQTIVVGGASEANT 738
            ++YD LF+++LIGDSGVGK+ LL RFT NEF     STIGV+F  +T+ V+G  ++ QIWDTAGQERY+ IT  YYR A G  LVYD++   +++++ +W+ ++ ++A   +  ++IGNK D +  R V  E  Q  A+  G+ F ETSA   +N++++F T L+E+     +K L      +S E A + ++E +    G A+ + T
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF-TRLTELVLQAHRKELDGLRTRASNELALAELEEDEGKPEGPANSSKT 209          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.573e-38
Identity = 78/161 (48.45%), Postives = 108/161 (67.08%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YAE   L F+ETSA  A+NV + F  I  ++
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.361e-38
Identity = 88/204 (43.14%), Postives = 125/204 (61.27%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG-GASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV        +EI+  I+KK L   EP  +    G+   V    +   ++  CCS+
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKK-LPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.361e-38
Identity = 88/204 (43.14%), Postives = 125/204 (61.27%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG-GASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV        +EI+  I+KK L   EP  +    G+   V    +   ++  CCS+
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKK-LPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38
Identity = 88/205 (42.93%), Postives = 129/205 (62.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQTIVVGGASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV        +EI+  I+KK L   EP    +N   G+ + +   ++  T+  CCS+
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGANSARGRGVDLTEPTQP-TRSQCCSN 215          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38
Identity = 88/205 (42.93%), Postives = 129/205 (62.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQTIVVGGASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV        +EI+  I+KK L   EP    +N   G+ + +   ++  T+  CCS+
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGANSARGRGVDLTEPTQP-TRNQCCSN 215          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38
Identity = 88/205 (42.93%), Postives = 129/205 (62.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQTIVVGGASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV        +EI+  I+KK L   EP    +N   G+ + +   ++  T+  CCS+
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGANSARGRGVDLTEPTQP-TRSQCCSN 215          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38
Identity = 88/205 (42.93%), Postives = 129/205 (62.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQTIVVGGASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV        +EI+  I+KK L   EP    +N   G+ + +   ++  T+  CCS+
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGANSTRGRGVDLTEPTQP-TRSQCCSN 215          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB15_HUMAN1.155e-3840.38Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB1C_DICDI1.509e-3844.51Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB15_MOUSE1.509e-3840.38Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB5C_BOVIN2.573e-3848.45Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5C_PONAB3.361e-3843.14Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_HUMAN3.361e-3843.14Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5A_MACFA4.390e-3842.93Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN4.390e-3842.93Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA4.390e-3842.93Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN4.390e-3842.93Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
back to top