FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38
Identity = 81/196 (41.33%), Postives = 121/196 (61.73%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG 717
            D+ +DY+FK++LIG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V  W  +++ ++  N  ++++GNK DL+  R V+ ED Q  A   G  F E SA E INV++ F+ ++     II  K   S EP+ S    G+   +G
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVD----IICDKMNESLEPSSSPGSNGKGPALG 207          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38
Identity = 83/208 (39.90%), Postives = 131/208 (62.98%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL------SSGEPAPSNIKEGQTIVVGGASEANT 738
            ++YD LF+++LIGDSGVGK+ LL RFT NEF     STIGV+F  +T++V+G  ++ QIWDTAGQERY+ IT  YYR A G  LVYD++   +++++ +W+ ++ ++A   +  ++IGNK D +  R V  E  Q  A   G+ F ETSA   +N++++F T L+E+     +K L      ++ E A + ++E +    G A+ + T
Sbjct:    3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESF-TRLTELVLQAHRKELEGLRTRANHELALAELEEDEGKPEGPANSSKT 209          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.733e-38
Identity = 77/161 (47.83%), Postives = 108/161 (67.08%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV + F  I  ++
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.733e-38
Identity = 88/205 (42.93%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPS--NIKEGQTIVVGGASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV        +EI+  I+KK L   EP     N   G+ + +   ++  T+  CCS+
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGINCTRGRGVDLTEPTQP-TRSQCCSN 215          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.488e-38
Identity = 80/196 (40.82%), Postives = 121/196 (61.73%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG 717
            D+ +DY+FK++LIG+S VGK++ L R+  + F     ST+G++F  +T+    + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V  W  +++ ++  N  ++++GNK DL+  R V  ED +  A+  G  F E SA E INV++ F+ ++     II  K   S EP+ S    G+   +G
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD----IICDKMNESLEPSSSPGSNGKGPALG 207          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.779e-38
Identity = 74/191 (38.74%), Postives = 124/191 (64.92%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQ 702
            D+ +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +T+    + +K QIWDTAGQERYR IT+AYYRGA+G +L+YDVT   +F +V  W+ +++ ++  N  ++++GNK D++  R ++ E  +  A++ G+ F ETSA E +NV+  F+ ++     II  K   S +  P+ +  GQ
Sbjct:   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVD----IICDKMSESLDADPTLVGGGQ 201          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.277e-37
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  154 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCS 756
            K+VL+GD G GKS+L+ RF + +F    +STIG  F + TL V   T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F    +W++EL+   + N+V+ + GNK DL+  R V  E+A+ YAE  GL F+ETSA  A+NV   F  I          K L   +PA +       ++V  A+E      CC+
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEI---------AKRLPRAQPAQN---PAGMVLVDRAAEGTRATSCCT 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.277e-37
Identity = 84/207 (40.58%), Postives = 123/207 (59.42%), Query Frame = 1
Query:  142 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP---CC 753
            +Y  K ++ G   VGKS+LL +F   EF  E  +TIGVEF TR++ ++   IK +IWDTAGQE +R+IT+ YYRGA  ALL YD+TK  +F+ +S W+ E+R  +  NIVI +IGNK D K  R + TE+    A+   + F ETSA +  +VE  F  +  ++  +I + +L+     P      Q+I +G  ++   KKP   CC
Sbjct:    3 EYHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVESVFDGVSKKVLSLIKQGTLTVVNKKP------QSIQLGAPTQETPKKPKSECC 203          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.668e-37
Identity = 87/205 (42.44%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQTIVVGGASEANTKKPCCSS 759
            FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+T+ ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV        +EI+  I+KK L   EP    +N   G+ + +   ++   +  CCS+
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGANSARGRGVDLTEPAQP-ARSQCCSN 215          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.668e-37
Identity = 69/174 (39.66%), Postives = 119/174 (68.39%), Query Frame = 1
Query:  121 RRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEIYR 639
            ++P    D+  +V++IG  GVGK++L+ RFT + FC   KST+GV+F  +T+++ G+ I+ QIWDTAGQER+ +ITSAYYR A G +LVYD+TK  TF+++ +W+K +  +A  +  ++++GNK D +  R ++ +  + +A++  G+ F E SA +  NV++ F  ++ +I +
Sbjct:   32 KQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 205          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3D_RAT4.390e-3841.33GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB15_BOVIN4.390e-3839.90Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB5C_CANFA5.733e-3847.83Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5A_PIG5.733e-3842.93Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB3D_MOUSE7.488e-3840.82Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3_DROME9.779e-3838.74Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RHN1_NICPL1.277e-3740.80Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RABQ_DICDI1.277e-3740.58Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB5A_MOUSE1.668e-3742.44Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB12_MOUSE1.668e-3739.66Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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