FC929776
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38 Identity = 81/196 (41.33%), Postives = 121/196 (61.73%), Query Frame = 1 Query: 130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG 717 D+ +DY+FK++LIG+S VGK++ L R+ + F ST+G++F +T+ + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+ +F V W +++ ++ N ++++GNK DL+ R V+ ED Q A G F E SA E INV++ F+ ++ II K S EP+ S G+ +G Sbjct: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVD----IICDKMNESLEPSSSPGSNGKGPALG 207
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.390e-38 Identity = 83/208 (39.90%), Postives = 131/208 (62.98%), Query Frame = 1 Query: 133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL------SSGEPAPSNIKEGQTIVVGGASEANT 738 ++YD LF+++LIGDSGVGK+ LL RFT NEF STIGV+F +T++V+G ++ QIWDTAGQERY+ IT YYR A G LVYD++ +++++ +W+ ++ ++A + ++IGNK D + R V E Q A G+ F ETSA +N++++F T L+E+ +K L ++ E A + ++E + G A+ + T Sbjct: 3 KQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESF-TRLTELVLQAHRKELEGLRTRANHELALAELEEDEGKPEGPANSSKT 209
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.733e-38 Identity = 77/161 (47.83%), Postives = 108/161 (67.08%), Query Frame = 1 Query: 151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633 FK+VL+G+S VGKS+L+ RF + +F +STIG F T+T+ ++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T TF W+KEL+ A NIVI + GNK DL RAV ++AQ+YA+ L F+ETSA A+NV + F I ++ Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.733e-38 Identity = 88/205 (42.93%), Postives = 128/205 (62.44%), Query Frame = 1 Query: 151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPS--NIKEGQTIVVGGASEANTKKPCCSS 759 FK+VL+G+S VGKS+L+ RF + +F +STIG F T+T+ ++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV +EI+ I+KK L EP N G+ + + ++ T+ CCS+ Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGINCTRGRGVDLTEPTQP-TRSQCCSN 215
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.488e-38 Identity = 80/196 (40.82%), Postives = 121/196 (61.73%), Query Frame = 1 Query: 130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG 717 D+ +DY+FK++LIG+S VGK++ L R+ + F ST+G++F +T+ + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+ +F V W +++ ++ N ++++GNK DL+ R V ED + A+ G F E SA E INV++ F+ ++ II K S EP+ S G+ +G Sbjct: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD----IICDKMNESLEPSSSPGSNGKGPALG 207
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.779e-38 Identity = 74/191 (38.74%), Postives = 124/191 (64.92%), Query Frame = 1 Query: 130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQ 702 D+ +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +T+ + +K QIWDTAGQERYR IT+AYYRGA+G +L+YDVT +F +V W+ +++ ++ N ++++GNK D++ R ++ E + A++ G+ F ETSA E +NV+ F+ ++ II K S + P+ + GQ Sbjct: 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVD----IICDKMSESLDADPTLVGGGQ 201
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.277e-37 Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 1 Query: 154 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCS 756 K+VL+GD G GKS+L+ RF + +F +STIG F + TL V T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F +W++EL+ + N+V+ + GNK DL+ R V E+A+ YAE GL F+ETSA A+NV F I K L +PA + ++V A+E CC+ Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEI---------AKRLPRAQPAQN---PAGMVLVDRAAEGTRATSCCT 200
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.277e-37 Identity = 84/207 (40.58%), Postives = 123/207 (59.42%), Query Frame = 1 Query: 142 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP---CC 753 +Y K ++ G VGKS+LL +F EF E +TIGVEF TR++ ++ IK +IWDTAGQE +R+IT+ YYRGA ALL YD+TK +F+ +S W+ E+R + NIVI +IGNK D K R + TE+ A+ + F ETSA + +VE F + ++ +I + +L+ P Q+I +G ++ KKP CC Sbjct: 3 EYHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVESVFDGVSKKVLSLIKQGTLTVVNKKP------QSIQLGAPTQETPKKPKSECC 203
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.668e-37 Identity = 87/205 (42.44%), Postives = 128/205 (62.44%), Query Frame = 1 Query: 151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQTIVVGGASEANTKKPCCSS 759 FK+VL+G+S VGKS+L+ RF + +F +STIG F T+T+ ++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV +EI+ I+KK L EP +N G+ + + ++ + CCS+ Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV--------NEIFMAIAKK-LPKNEPQNPGANSARGRGVDLTEPAQP-ARSQCCSN 215
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 1.668e-37 Identity = 69/174 (39.66%), Postives = 119/174 (68.39%), Query Frame = 1 Query: 121 RRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEIYR 639 ++P D+ +V++IG GVGK++L+ RFT + FC KST+GV+F +T+++ G+ I+ QIWDTAGQER+ +ITSAYYR A G +LVYD+TK TF+++ +W+K + +A + ++++GNK D + R ++ + + +A++ G+ F E SA + NV++ F ++ +I + Sbjct: 32 KQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 205 The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bpback to top |