FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 55/164 (33.54%), Postives = 95/164 (57.93%), Query Frame = 1
Query:  148 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR--DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            L KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++G  ++  I DTAGQE Y AI   Y+R   G LLV+ +T+  +F   + + +++      +  I ++++GNK+DL+  R V  ++A+  AE  G+ ++ETSA    NV+K F  ++ EI
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 58/200 (29.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query:  121 RRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQT 705
            +R +       KV+ +G++ VGKS ++ R+    F  +  +TIG+++    +QV  R IK  I+D AG   +  + + +Y+   G +LVYDV +  +F+ +  WL E++          NIV ++  NK D    R+V   + + +AE  G  + ETSA     + + FQT  S I  +      + G+  PS++  G T
Sbjct:    7 KRKEARKSLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYSAIIDLCD----NGGKRPPSSMGVGFT 202          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.086e-20
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA 678
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  + + ++       + DTAGQE Y A+   Y R   G LLVY +T   +FE +  + +++    D +   I+++GNK DL   R V+ ++ +S A + G  FIETSA   INVE AF  ++ EI R   + S  SG  A
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSEQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRRYNKEMSNPSGSGA 184          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 61/181 (33.70%), Postives = 102/181 (56.35%), Query Frame = 1
Query:  154 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEG------RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL---KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI----YRIISKKS 657
            KVVL+GDS VGK+++++R    +F  +  +TIG  F T+T++V        + I  +IWDTAGQERY+++   YYR A  AL+V+++   ++ +    W ++L+D A    VI ++GNK DL   +H   V        AE +GL ++  SA    N +   + I+S +    ++ +SK +
Sbjct:    6 KVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRAQGTQVI-IVGNKYDLVCEEHSGEVTIP-----AELQGLPYVAVSAKTGYNFDTLNKIIISLVPESQFKTLSKNN 180          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RBL2B_HUMAN (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  154 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF--------------QTILSEIYRIISKKSLSSGE 672
            K++ +GDS VGKS L+ RF  + F  +  ST  +     T  V+GRTI    WDTAGQER++++ ++YY  A   ++V+DV +  T+ N+S W  ELR+     I  +++ NK D  ++    T+ + ++A++  L     SA +  NV K F              Q  + EI++ +   SL   E
Sbjct:   23 KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFR-PEIPCIVVANKIDDINV----TQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEE 204          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  148 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHL-RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 639
            L K+V++GD GVGKS L  + T+N+F  E   TI   +  + + ++       I DTAGQE Y A+   Y R   G L+VY +    +FE V+ + +++    D S   I++IGNK DL    R V   + +  A+  G  F+ETSA   +NVE+AF T++ EI R
Sbjct:    4 LLKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYR-KQVNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREIKR 168          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAS1_RHIRA (Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 57/164 (34.76%), Postives = 95/164 (57.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 639
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + ++  T    + DTAGQE Y A+   Y R   G LLVY +T   +FE ++ + +++    D +   M ++GNK DL+  R V++++ +  A+  G  FIETSA + INV++AF  ++ +I R
Sbjct:   11 YKLVMVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDSETALLDVLDTAGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQICRVKDRDYFPMVLVGNKCDLEGDRQVSSQEGRDLAKNFGCQFIETSAKQRINVDEAFFEVVRDIRR 173          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            FK+VL+GD GVGK+  ++R    EF     +T GV  +   L      I+  IWDTAGQE+   +   YY GA  A++++DVT   T++N+ +W K+L    + N+ I+++GNK D K  +  A +   ++  +  L + + SA      EK F  IL ++
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRICE-NVPIVLVGNKVDSKDSKVKARQ--ITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKL 169          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: DJ27B_XENLA (DnaJ homolog subfamily C member 27-B OS=Xenopus laevis GN=dnajc27-B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 54/182 (29.67%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  115 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR---------DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            + +R D       KV+ +G++ VGKS ++ R+    F  + ++TIG+++    +Q++ R IK  I+D AG   +  + + +Y+   G +LVYDV +  +FE++  WL E++         D+ D NIV  +  NK D    R V   + + ++E +G  + ETSA     + + FQ   S I
Sbjct:    5 LQKRKDSRKPLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVQIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFESLDAWLAEMKQELGPQINIDNLD-NIVFAVCANKIDSTKHRCVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSSI 185          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.853e-20
Identity = 59/175 (33.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++  T    I DTAGQE Y A+   Y R   G L VY +T  ++++ ++ + ++ LR      + ++++GNK DL H R V+  + Q  A+     F+E+SA   INVE+AF +++ EI + + K   SSG+
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIRKEL-KGDQSSGK 176          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALB_MOUSE8.317e-2133.54Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
DJC27_CHICK8.317e-2129.00DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]
RAS_EMENI1.086e-2035.03Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
YPT10_YEAST1.419e-2033.70GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RBL2B_HUMAN1.419e-2032.09Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2... [more]
RASC_DICDI1.419e-2037.35Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RAS1_RHIRA1.419e-2034.76Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1... [more]
RAN_TETPY1.419e-2034.16GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
DJ27B_XENLA1.419e-2029.67DnaJ homolog subfamily C member 27-B OS=Xenopus la... [more]
RASD_DICDI1.853e-2033.71Ras-like protein rasD OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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