FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASN_CAVPO (GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +++ + ++++   DS ++ ++++GNK DL   R V T+ A   A+  G+ FIETSA     VE AF T++ EI +   KK  S+ +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSNDD 176          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 60/178 (33.71%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI +   +K     E  P
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP 179          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 55/200 (27.50%), Postives = 100/200 (50.00%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL----KHLRAVATEDAQSYAEREGL----SFIETSALEAINVEKAFQT---ILSEIYRIISKKSLSSGEPAPSNIKEG 699
            +E   + K++ +GDS VGK++L   +   E+      +IG ++  + L+VE + +   +WDT GQER++A +  Y+RGA    L +D+    +F N+ +W+ E+  +   NI  +++G K+D+    K +     E      E +G+     + ETSA  + NV + +     +  E Y I+   S+      P  +K G
Sbjct:    2 KEEKTMLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTELYNVAAKLALEHYSIVKYISIIRPIGPPEEVKVG 201          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 57/162 (35.19%), Postives = 91/162 (56.17%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 60/178 (33.71%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI +   +K     E  P
Sbjct:    4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP 179          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK+VL+GD G GK+  + R    EF  +  +TIGVE            IK  +WDTAGQE++  +   YY  A   ++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 158          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.784e-19
Identity = 59/209 (28.23%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI-------ISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            +K+V++GD GVGKS L  +  ++ F  E   TI   +  +  +++G      + DTAGQE Y A+   Y R   G LLVY++T  ++F+ +S + ++ LR        ++++ NK DL+  R V+  + +  A+     ++ETSA   +NVE+AF +++  I R           K        P++  +  + V    +E      CC
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPASTAKRASAVNNSKTEDEVSTKCC 216          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RASK_MONDO (GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.017e-18
Identity = 59/170 (34.71%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 657
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA      + AF T++ EI +   K S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGGDDAFYTLVREIRKHKEKMS 171          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAS1_DROWI (Ras-like protein 1 OS=Drosophila willistoni GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.017e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWN-VQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAS1_DROVI (Ras-like protein 1 OS=Drosophila virilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.017e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_CAVPO4.564e-1934.29GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1[more]
RASH_HUMAN4.564e-1933.71GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RABL_DICDI4.564e-1927.50Ras-related protein RabL OS=Dictyostelium discoide... [more]
RASH_RAT5.960e-1935.19GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_MSVNS5.960e-1933.71GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
GSP1_ASHGO5.960e-1934.42GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
RAS_SCHPO7.784e-1928.23Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RASK_MONDO1.017e-1834.71GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 ... [more]
RAS1_DROWI1.017e-1834.57Ras-like protein 1 OS=Drosophila willistoni GN=Ras... [more]
RAS1_DROVI1.017e-1834.57Ras-like protein 1 OS=Drosophila virilis GN=Ras85D... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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