FC929798

Overview
NameFC929798
Unique NameFC929798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ACA1_ORYSJ (Calcium-transporting ATPase 1, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0586600 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.250e-57
Identity = 112/175 (64.00%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIXHSFVLCQV 757
            +ADIGLAMGI GTEVAKES+D+IILDDNF+++V V +WGRSVY NIQKF+QFQLTVNV AL++NF +A  +G+ PL AVQLLWVN+IMDTLGALALATEPP D LM+R PVGR    ITN+MWRN+L Q+ YQ  V+  L  QGK +  L+      +  V NT+I +SFV CQV
Sbjct:  768 EADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNVVALLVNFSSACFTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKREPVGRTGKFITNVMWRNILGQSFYQFIVMWYLQTQGKSMFGLDGPD---AEVVLNTIIFNSFVFCQV 939          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ACA1_ARATH (Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.633e-57
Identity = 110/175 (62.86%), Postives = 139/175 (79.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIXHSFVLCQV 757
            +ADIGLAMGI GTEVAKES+D+IILDDNF+++V V +WGRSVY NIQKF+QFQLTVNV AL++NF++A  +G+ PL AVQLLWVN+IMDTLGALALATEPP D LM+RSPVGR+   I+N+MWRN+L Q+ YQ+ ++  L  +GK +  L+      S+   NTLI + FV CQV
Sbjct:  768 EADIGLAMGISGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFLSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPQDDLMKRSPVGRKGNFISNVMWRNILGQSLYQLVIIWCLQTKGKTMFGLDGPD---SDLTLNTLIFNIFVFCQV 939          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ACA4_ARATH (Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.133e-57
Identity = 111/175 (63.43%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIXHSFVLCQV 757
            +ADIGLAMGI GTEVAKE++D+II+DDNF ++V V RWGR+VY NIQKF+QFQLTVNV AL+INFV+A  +G  PL AVQLLWVN+IMDTLGALALATEPP + LM+R+P+ R    IT  MWRN+  Q+ YQ+ VL +LNF GK +L L+      S  V NT+I +SFV CQV
Sbjct:  759 EADIGLAMGIAGTEVAKENADVIIMDDNFKTIVNVARWGRAVYINIQKFVQFQLTVNVVALIINFVSACITGSAPLTAVQLLWVNMIMDTLGALALATEPPNEGLMKRAPIARTASFITKTMWRNIAGQSVYQLIVLGILNFAGKSLLKLDGPD---STAVLNTVIFNSFVFCQV 930          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ACA6_ORYSJ (Probable calcium-transporting ATPase 6, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os05g0495600 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.786e-57
Identity = 111/175 (63.43%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIXHSFVLCQV 757
            ++DIGLAMGI GTEVAKES+D+II+DDNF ++V V RWGR+VY NIQKF+QFQLTVN+ AL++NFV+A   G  PL AVQLLWVN+IMDTLGALALATEPP D +M+R PV R +  IT IMWRN+L Q  YQ+ VL  L   GK++L++E      S+K  NTLI +SFV CQV
Sbjct:  750 ESDIGLAMGITGTEVAKESADVIIMDDNFETIVNVARWGRAVYLNIQKFVQFQLTVNIVALIVNFVSACIIGSAPLTAVQLLWVNMIMDTLGALALATEPPNDEMMKRPPVRRGDNFITRIMWRNILGQGLYQLLVLATLMVIGKKLLSIE---GPQSDKTINTLIFNSFVFCQV 921          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ACA7_ARATH (Putative calcium-transporting ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=ACA7 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.358e-56
Identity = 111/175 (63.43%), Postives = 134/175 (76.57%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIXHSFVLCQV 757
            +ADIGLAMGI GTEVAKE +D+IILDDNF+++V V +WGRSVY NIQKF+QFQLTVNV AL++NF +A  +G  PL AVQLLWVN+IMDTLGALALATEPP + LM+R PVGRR   ITN MWRN+L QA YQ  ++ +L  +GK +  L     + S  V NTLI + FV CQV
Sbjct:  766 EADIGLAMGIAGTEVAKEIADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPNNELMKRMPVGRRGNFITNAMWRNILGQAVYQFIIIWILQAKGKSMFGL---VGSDSTLVLNTLIFNCFVFCQV 937          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ACA3_ORYSJ (Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.996e-55
Identity = 104/175 (59.43%), Postives = 138/175 (78.86%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKNTLIXHSFVLCQV 757
            +ADIGLAMGI GTEVAKE++D+II+DDNF++++ V +WGRSVY NIQKF+QFQLTVNV AL++NF++A  +G  PL  VQLLWVNLIMDTLGALALATEPP D +M+R PVGR +  IT +MWRN++ Q+ YQ+ VL VL  +GK +L +   +   ++ + NT + ++FV CQV
Sbjct:  771 EADIGLAMGIAGTEVAKENADVIIMDDNFSTIINVAKWGRSVYINIQKFVQFQLTVNVVALMVNFISASFTGSAPLTIVQLLWVNLIMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIVGQSIYQLVVLGVLLLRGKSLLQI---NGPQADSLLNTFVFNTFVFCQV 942          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: AT2B4_RAT (Plasma membrane calcium-transporting ATPase 4 OS=Rattus norvegicus GN=Atp2b4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.877e-48
Identity = 94/178 (52.81%), Postives = 130/178 (73.03%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNAHSNKVKN---TLIXHSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPTD L++R P GR +PLI+  M +N+L  A YQ+ ++ +L F G ++ +++S   A  N   +   T++ ++FVL Q+
Sbjct:  795 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFSGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTDSLLRRRPYGRNKPLISRTMMKNILGHAVYQLGIVFLLVFAGDKLFDIDSGRKAPLNSPPSQHYTIVFNTFVLMQL 972          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: AT2B4_HUMAN (Plasma membrane calcium-transporting ATPase 4 OS=Homo sapiens GN=ATP2B4 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 8.982e-48
Identity = 105/222 (47.30%), Postives = 145/222 (65.32%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNA--HSNKVKN-TLIXHSFVLCQV----------------SKLSGNTIIC*VEL------LFVVNFEG 823
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L++R P GR +PLI+  M +N+L  A YQ+ V+ +L F G++  +++S   A  HS   ++ T++ ++FVL Q+                S +  N I C V L      +F+V F G
Sbjct:  795 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLKRRPYGRNKPLISRTMMKNILGHAFYQLIVIFILVFAGEKFFDIDSGRKAPLHSPPSQHYTIVFNTFVLMQLFNEINSRKIHGEKNVFSGIYRNIIFCSVVLGTFICQIFIVEFGG 1016          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: AT2B2_OREMO (Plasma membrane calcium-transporting ATPase 2 (Fragment) OS=Oreochromis mossambicus GN=atp2b2 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.982e-48
Identity = 95/178 (53.37%), Postives = 134/178 (75.28%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNA--HSNKVKN-TLIXHSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF+S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L++R P GR +PLI++ M +N+L    YQ+ ++  L F G++I +++S  NA  HS   ++ T+I ++FV+ Q+
Sbjct:  813 KADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLKRKPYGRNKPLISSTMTKNILGHGVYQLIIIFTLLFVGEQIFDIDSGRNAPLHSPPSEHYTIIFNTFVMMQL 990          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: AT2B1_RAT (Plasma membrane calcium-transporting ATPase 1 OS=Rattus norvegicus GN=Atp2b1 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 8.982e-48
Identity = 96/178 (53.93%), Postives = 132/178 (74.16%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSNA--HSNKVKN-TLIXHSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDTL +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ+ V+  L F G++  +++S  NA  H+   ++ T++ ++FVL Q+
Sbjct:  807 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFAGEKFFDIDSGRNAPLHAPPSEHYTIVFNTFVLMQL 984          
The following BLAST results are available for this feature:
BLAST of FC929798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ACA1_ORYSJ1.250e-5764.00Calcium-transporting ATPase 1, plasma membrane-typ... [more]
ACA1_ARATH1.633e-5762.86Calcium-transporting ATPase 1, chloroplastic OS=Ar... [more]
ACA4_ARATH2.133e-5763.43Calcium-transporting ATPase 4, plasma membrane-typ... [more]
ACA6_ORYSJ2.786e-5763.43Probable calcium-transporting ATPase 6, plasma mem... [more]
ACA7_ARATH2.358e-5663.43Putative calcium-transporting ATPase 7, plasma mem... [more]
ACA3_ORYSJ1.996e-5559.43Calcium-transporting ATPase 3, plasma membrane-typ... [more]
AT2B4_RAT6.877e-4852.81Plasma membrane calcium-transporting ATPase 4 OS=R... [more]
AT2B4_HUMAN8.982e-4847.30Plasma membrane calcium-transporting ATPase 4 OS=H... [more]
AT2B2_OREMO8.982e-4853.37Plasma membrane calcium-transporting ATPase 2 (Fra... [more]
AT2B1_RAT8.982e-4853.93Plasma membrane calcium-transporting ATPase 1 OS=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BH02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929798 ID=FC929798; Name=FC929798; organism=Citrus clementina; type=EST; length=844bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCAATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTNCATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTTGTTGTAAATTTCGAGGGCAGCTTGATGCTGCTAGCATTG
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