FC929798

Overview
NameFC929798
Unique NameFC929798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ATC2_YEAST (Calcium-transporting ATPase 2 OS=Saccharomyces cerevisiae GN=PMC1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.619e-39
Identity = 82/177 (46.33%), Postives = 121/177 (68.36%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVP--LNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRIL--NLESDSNAHSNKVKNTLIXHSFVLCQ 754
            AD+G +MGI GTEVA+E+SDII++ D+F+++V  ++WGR V  +I+KFIQFQL VN+ A+++ FV++V+S D    L AVQLLW+NLIMDTL ALALAT+ P  ++M R P GR   LI+   W+ +L QA+ Q+ V  +L+F G  +     E +  +H  +  N +  ++FV  Q
Sbjct:  852 ADVGFSMGISGTEVAREASDIILMTDDFSAIVNAIKWGRCVSVSIKKFIQFQLIVNITAVILTFVSSVASSDETSVLTAVQLLWINLIMDTLAALALATDKPDPNIMDRKPRGRSTSLISVSTWKMILSQATLQLIVTFILHFYGPELFFKKHEDEITSHQQQQLNAMTFNTFVWLQ 1028          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ATC1_SCHPO (Calcium-transporting ATPase 1 OS=Schizosaccharomyces pombe GN=pmr1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.264e-25
Identity = 57/139 (41.01%), Postives = 95/139 (68.35%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            ADIG+AMG QGT+VAKE++D+I+ DD+FA+++  V  G+ ++ NI+ FI FQL+ +VAAL +  +++V     PLNA+Q+LW+N++MD   A +L  E   + +M + P  R  P+I+  + + +L+ A   V+V +V+
Sbjct:  638 ADIGIAMGRQGTDVAKEAADMILTDDSFATILSAVEEGKGIFNNIKNFITFQLSTSVAALSLIAISSVFGFQNPLNAMQILWINILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVLLSAFIIVTVTIVV 776          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ATCL_SYNE7 (Probable calcium-transporting ATPase OS=Synechococcus elongatus (strain PCC 7942) GN=pacL PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.380e-24
Identity = 64/147 (43.54%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALV-INFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLL---IQASYQVSVLLVLNFQ 661
            QA+IG+AMGI GT+V+KE+SD+++LDDNFA++V  V  GR VY NI+KFI++ L  N+  L+ I     +  G VPL  +Q+LW+NL+ D + ALALA EP    +MQR P   +E +    +   +L   +  S    VL+V+ +Q
Sbjct:  671 QANIGVAMGITGTDVSKEASDMVLLDDNFATIVAAVEEGRIVYGNIRKFIKYILGSNIGELLTIASAPLLGLGAVPLTPLQILWMNLVTDGIPALALAVEPGDPTIMQRRPHNPQESIFARGLGTYMLRVGVVFSAFTIVLMVIAYQ 817          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ATCL_BACSU (Calcium-transporting ATPase OS=Bacillus subtilis GN=yloB PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.045e-24
Identity = 54/143 (37.76%), Postives = 93/143 (65.03%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLIT-NIMWRNLLIQASYQVSVLLVLNF 658
            QADIG++MGI GT+VAKE+S ++++DDNFA++   ++ GR++Y NI+KFI++ L  NV  +++   A + +  +PL  +Q+LWVNL+ D L A+AL  + P   +M+R P   +E +    + W+  ++   + + V  +L F
Sbjct:  643 QADIGVSMGITGTDVAKEASSLVLVDDNFATIKSAIKEGRNIYENIRKFIRYLLASNVGEILVMLFAMLLALPLPLVPIQILWVNLVTDGLPAMALGMDQPEGDVMKRKPRHPKEGVFARKLGWK--VVSRGFLIGVATILAF 783          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.306e-22
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY----QVSVLLVLNFQGKRI-LNLESDSN 697
            ADIG+AMGI GTEVAKE+SD+++ DDNF+++V  V  GRS+Y N++ FI++ ++ NV  ++  F+ AV      L  VQLLWVNL+ D   A AL   P    +MQ+ P    + LI + ++   ++  SY     V + +V   Q   + +N+ SD +
Sbjct:  739 ADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAVLGIPECLIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKNTDALINSWVFFRYMVIGSYVGIATVGIFIVWYTQASFLGINIVSDGH 897          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ATC_PLAFK (Calcium-transporting ATPase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=ATP6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.306e-22
Identity = 54/131 (41.22%), Postives = 82/131 (62.60%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY 628
            ADIG+AMGI GTEVAKE+SDI++ DDNF ++V+ ++ GR +Y N++ FI++ ++ N+  +   F+ A+      L  VQLLWVNL+ D L A AL   PP   +M+  P  + + LI  +     +I  +Y
Sbjct:  925 ADIGIAMGINGTEVAKEASDIVLADDNFNTIVEAIKEGRCIYNNMKAFIRYLISSNIGEVASIFITALLGIPDSLAPVQLLWVNLVTDGLPATALGFNPPEHDVMKCKPRHKNDNLINGLTLLRYIIIGTY 1055          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: ATC1_YARLI (Calcium-transporting ATPase 1 OS=Yarrowia lipolytica GN=PMR1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.228e-22
Identity = 51/118 (43.22%), Postives = 81/118 (68.64%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLIT 589
            ADIG+AMG  GT+VAKE++D+I+ DD+FA+++  +  G+ ++ NI+ FI FQL+ ++AAL I  VA +   + PLN +Q+LW+N++MD   A +L  EP    +M + P  R E ++T
Sbjct:  671 ADIGIAMGQGGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIRNFITFQLSTSMAALSIVAVATIMGLENPLNPMQILWINILMDGPPAQSLGVEPVDPDVMNKPPRPRNEKVMT 788          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: AT2C1_MOUSE (Calcium-transporting ATPase type 2C member 1 OS=Mus musculus GN=Atp2c1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.800e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQA 622
            ADIG+AMG  GT+V KE++D+I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++AAL +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++++ P   ++ ++T  +   +L+ +
Sbjct:  654 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGSPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 782          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: AT2C1_RAT (Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus GN=Atp2c1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.963e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQA 622
            ADIG+AMG  GT+V KE++D+I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++AAL +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++++ P   ++ ++T  +   +L+ +
Sbjct:  655 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 783          
BLAST of FC929798 vs. ExPASy Swiss-Prot
Match: AT2C1_PONAB (Calcium-transporting ATPase type 2C member 1 OS=Pongo abelii GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.963e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQA 622
            ADIG+AMG  GT+V KE++D+I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++AAL +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++++ P   ++ ++T  +   +L+ +
Sbjct:  654 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 782          
The following BLAST results are available for this feature:
BLAST of FC929798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ATC2_YEAST2.619e-3946.33Calcium-transporting ATPase 2 OS=Saccharomyces cer... [more]
ATC1_SCHPO6.264e-2541.01Calcium-transporting ATPase 1 OS=Schizosaccharomyc... [more]
ATCL_SYNE72.380e-2443.54Probable calcium-transporting ATPase OS=Synechococ... [more]
ATCL_BACSU9.045e-2437.76Calcium-transporting ATPase OS=Bacillus subtilis G... [more]
ECAP_SOLLC1.306e-2238.99Calcium-transporting ATPase, endoplasmic reticulum... [more]
ATC_PLAFK1.306e-2241.22Calcium-transporting ATPase OS=Plasmodium falcipar... [more]
ATC1_YARLI2.228e-2243.22Calcium-transporting ATPase 1 OS=Yarrowia lipolyti... [more]
AT2C1_MOUSE3.800e-2236.43Calcium-transporting ATPase type 2C member 1 OS=Mu... [more]
AT2C1_RAT4.963e-2236.43Calcium-transporting ATPase type 2C member 1 OS=Ra... [more]
AT2C1_PONAB4.963e-2236.43Calcium-transporting ATPase type 2C member 1 OS=Po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BH02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929798 ID=FC929798; Name=FC929798; organism=Citrus clementina; type=EST; length=844bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCAATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTNCATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTTGTTGTAAATTTCGAGGGCAGCTTGATGCTGCTAGCATTG
back to top