FC929800

Overview
NameFC929800
Unique NameFC929800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length785
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:11..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.743e-48
Identity = 89/142 (62.68%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  360 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            KVFFD+ +  +PAGRIV  L+    P+T ENFRALCTGEKG+G SGKPLHYK S FHR+IP FM Q            ESIYG  F DENF  KH+ PG+LSMANAGP TNGSQFF+ T  T WLDG+H VFG V+EGMD+V
Sbjct:   31 KVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIV 172          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.743e-48
Identity = 97/146 (66.44%), Postives = 104/146 (71.23%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            M NPKVFFD++   +P GRIVMEL ADV P+TAENFRALCTGEKG G       YKG SFHRVIP FM Q            +SIYG+ F DENF  KHTGPG LSMANAGP TNGSQFF+ T K  WLDGKHVVFG V EGMDVV
Sbjct:    1 MSNPKVFFDVSANSKPLGRIVMELRADVVPQTAENFRALCTGEKGFG-------YKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVV 139          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.322e-47
Identity = 89/143 (62.24%), Postives = 101/143 (70.63%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            PKVFFD+ V GQ +GR+  +LF+D  P+TAENFRALCTGEKG G SGKPLHYK S FHR+IPGFM Q            ESIYG  F DENF  KH G G+LSMANAGP TNGSQFF+    T WLDG H VFG +V+G  V+
Sbjct:    7 PKVFFDIAVNGQHSGRMTFKLFSDTVPKTAENFRALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVL 149          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.505e-46
Identity = 91/143 (63.64%), Postives = 101/143 (70.63%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            P+VFFD+ +G Q  GRI  ELF DV P+TAENFRALCTGEKG+GK GKPLH+KGS FHRVI  FM Q            ESIYG  F DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG V+ G  VV
Sbjct:    7 PRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVV 149          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.966e-46
Identity = 90/143 (62.94%), Postives = 105/143 (73.43%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            P+V+FD+++GG+  GRI MEL+AD+ P+TA+NFR+LCTGEKGIGKSGKPLHYKGS FHRVI  FM Q            ESIYG+ F DE F  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG V+ G  VV
Sbjct:   11 PRVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVV 153          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.353e-46
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            P VFFD+ +GGQ AGR+   L++D+ P+TAENFRALCTGEKG+G+SGKPL YKGS+FHRVI GFMCQ            ESIYG  F DE F   H+ P +LSMANAGP TNGSQFF+  + T  LDGKHVVFG V++G  VV
Sbjct:    5 PIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVV 147          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.353e-46
Identity = 93/149 (62.42%), Postives = 106/149 (71.14%), Query Frame = 3
Query:  339 QSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            Q+K+ N KV+FD+ +GG+ AGRIVM LF +V P+T ENFRALCTGEK  G       YKGSSFHR+I  FM Q             SIYG+ F DENF  KHTGPGILSMANAGP TNGSQFF+CT KT WLD KHVVFG V+EGM +V
Sbjct:   90 QAKVTN-KVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLV 230          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.379e-46
Identity = 90/148 (60.81%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  342 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDV 782
            S   NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKG G + GKPLH+KG  FHR+I  FM Q            ESIYG  F DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFG V++G+ V
Sbjct:   11 SNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGV 158          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.379e-46
Identity = 90/146 (61.64%), Postives = 104/146 (71.23%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            M N  +FFD+TV G+P GRI ++ FAD  P+TAENFRAL TGEKG         YKGS FHR+IPGFMCQ            +SIYG  F DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG V E +++V
Sbjct:    1 MVNSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIV 139          
BLAST of FC929800 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 5.720e-46
Identity = 90/148 (60.81%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  342 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDV 782
            S   NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKG G + GKPLH+KG  FHR+I  FM Q            ESIYG  F DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFG V++G+ V
Sbjct:   11 SNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGV 158          
The following BLAST results are available for this feature:
BLAST of FC929800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIB_DICDI2.743e-4862.68Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIA1_RHIOR2.743e-4866.44Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYP6_RHIOR2.322e-4762.24Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_EMENI1.505e-4663.64Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_GIBZE1.966e-4662.94Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPID_AMAMU3.353e-4661.54Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
CP20C_ARATH3.353e-4662.42Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPID_MOUSE4.379e-4660.8140 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PAL4A_HUMAN4.379e-4661.64Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPID_RAT5.720e-4660.8140 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BH05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929800 ID=FC929800; Name=FC929800; organism=Citrus clementina; type=EST; length=785bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCANAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTCGGGTCAGTCGTCGAAGGAATGGACGTCGTC
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