FC929809

Overview
NameFC929809
Unique NameFC929809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929809_ssr137 microsatellite FC929809_ssr137:137..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267 contig Ccv1_Contig9267:2..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = -2
Query:  451 GYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 768
            G +    L  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L      G  +NPA SFG A++     +W+ QW++WVGP IG  +A   ++ +
Sbjct:  137 GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWSWESQWVYWVGPLIGGGLAGVIYEVL 236          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2
Query:  451 GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 768
            GY+  + L  EI+   + +  +  ATD +           AP+ IG  + ++HL +IP+T T +NPARS G A +Y  + A    W+FWV P +GA + A  ++ I
Sbjct:  127 GYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = -2
Query:  448 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 783
            N L  G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++    + + + W++WVGP IG  +A+  + ++L
Sbjct:  119 NTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLASLLYDFLL 223          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  475 GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFV 768
            G++  + + AEI+ T + +  +  ATD +        P  APL IG A+ +++L +IPIT T +NPARS   A+  N   A +  W FWV P IG  V
Sbjct:  128 GFSLQSAIVAEIVLTAIFLIVIIGATDRRAP------PGFAPLAIGLALVLINLISIPITNTSVNPARSTAVAIFQN-TWALEQLWFFWVMPIIGGIV 218          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = -2
Query:  448 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 789
            G N + +  + G  +  E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARSFG AVI  K   +   WIFWVGP  GA +A+  + +IL
Sbjct:  128 GVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGSPAAM------IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGPLTGAVLASLIYNFIL 232          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = -2
Query:  448 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 789
            G N + +  + G  +  E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARSFG AVI  K   +   WIFWVGP  GA +A+  + +IL
Sbjct:  128 GVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLASPAAM------IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGPLTGAVLASLIYNFIL 232          
The following BLAST results are available for this feature:
BLAST of FC929809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
TIP11_ORYSJ2.994e-1137.38Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
AQPZ_VIBVY2.994e-1133.96Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]
MIP_RABIT6.670e-1133.04Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQPZ_PHOLL6.670e-1137.76Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]
AQP6_RAT6.670e-1135.96Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP6_MOUSE6.670e-1135.96Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AE03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929809 ID=FC929809; Name=FC929809; organism=Citrus clementina; type=EST; length=835bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCCA
AGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGAG
AAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTCC
GGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATACC
TGTTGTAGTATGATTTTTGGAAAGCTTTCACAACC
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