FC929814
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20 Identity = 55/169 (32.54%), Postives = 97/169 (57.40%), Query Frame = 3 Query: 3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDV 506 +I+S++ KK+ +I+ + T AG D Q R + ++ +L+++ +++ G + L++N L R + V +I G D+ GPG+Y +D+ GG ++ TR S GSGSP AYGVL+ Y+ +M++ I++AT RD+ASG V + +K+L ++V Sbjct: 34 FIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKRLDPEEV 202
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18 Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 3 Query: 6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASG-GVASVYYVGPNGWKKLSGDDV 506 I+ ++ KI +I+ ++ T+AG AD Q + L + L+ + N +IS+ A+ L ANIL+S R V T++ G DE G +Y +D GG + S GSGSP AYGVL+ Y ++ + I A RD SG G+ G++ LS +++ Sbjct: 35 IAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEEGFRMLSEEEI 202
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16 Identity = 60/190 (31.58%), Postives = 94/190 (49.47%), Query Frame = 3 Query: 3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAE 569 +I+S++ KKI +I M T AG D QF R + I+ L+E+ +R+ +V + L +N+L SYR V +I G D G +Y +D GG ++ + GSGS AYGVL+ + ++ + IY A RD+ASG V K++ D+ +Y +P VEQ +A+ Sbjct: 36 FIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVV--------KITEDE-------FYQYSPEEVEQILAK 210
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15 Identity = 51/169 (30.18%), Postives = 87/169 (51.48%), Query Frame = 3 Query: 3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV-GPNGWKKLSGDDV 506 +I ++ KK+ +I+ Y T+AG D Q R + + L+ L + + + + LL+N+L + M V ++ G D T P ++ +D+ GG ++ S GSGSP+ YGVL+S Y M++ I A RD+ASGG+ V + +G+ +L D + Sbjct: 33 FIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQI 200
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14 Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = 3 Query: 6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGEL 515 ++ + KK+ +I+ Y+ T+AG D Q R L + +L+++ R I + LL+NIL+S R +I G+D G L+ +D GG + F+ GSGSP AYGVL++GY DMS+ + A RD SG S+ + +G K +++ ++ Sbjct: 32 VADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKI 203
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.148e-12 Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 3 Query: 3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKK--LSGDDVGELH 518 Y+SS+++ K+I+++ + +AG AD Q + + H + + V A+ +L + Y+ + L G + AGWD + GP +Y V + GG L F++G SGS Y YG D+ YK DMS + A RD SGGVA + + G + + GD + + H Sbjct: 42 YVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEE-LQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPGDKLPKFH 215
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.148e-12 Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 3 Query: 3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKK--LSGDDVGELH 518 Y+SS+++ K+I+++ + +AG AD Q + + H + + V A+ +L + Y+ + L G + AGWD + GP +Y V + GG L F++G SGS Y YG D+ YK DMS + A RD SGGVA + + G + + GD + + H Sbjct: 42 YVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEE-LQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPGDKLPKFH 215
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12 Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 3 Query: 6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLS 494 + +++V KI +I+ ++ AG D R L + +L+ + +R+SV + LLAN+L R + ++ G+DE P LY VD GG + + GSG +AY VLDS Y+ D+ + I A RD SG V + G+++LS Sbjct: 36 VYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRELS 197
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11 Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 3 Query: 6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDV 506 I +++V KI +I+ ++ AG D R L + +L+ + +R+SV + LLANI+ + ++ G+DE P LY VD GG + + GSG +AY +LDS YK ++++ I A RD SG V + G+K+LS ++ Sbjct: 36 IYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEK-PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKELSDSEL 201 The following BLAST results are available for this feature:
BLAST of FC929814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929814 ID=FC929814; Name=FC929814; organism=Citrus clementina; type=EST; length=809bpback to top |