FC929819

Overview
NameFC929819
Unique NameFC929819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NUOB_ENT38 (NADH-quinone oxidoreductase subunit B OS=Enterobacter sp. (strain 638) GN=nuoB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 67/145 (46.21%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:  331 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ  + + R    W
Sbjct:   46 MHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKERRPLSW 189
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NUOB_CAMFF (NADH-quinone oxidoreductase subunit B OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=nuoB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 64/143 (44.76%), Postives = 100/143 (69.93%), Query Frame = 1 
Query:  313 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMN 738
            + V+++LD + N+ R+ S+WPM FG ACCA+E M   ++++DL RFG  + R SPRQ+D+M++AGT++ K AP L+++YDQM +P+WV+SMG+CA                D+I+PVD+Y+ GCPP  EA++  IL +Q K++
Sbjct:   10 DVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFGAEVMRFSPRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACA-CSGGFYDNYTTLQGIDQIIPVDVYISGCPPRPEAIIDAILAIQDKIS 151
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NUOB1_NITOC (NADH-quinone oxidoreductase subunit B 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 65/149 (43.62%), Postives = 102/149 (68.46%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + ++L D+V + R+ S+WP +FGL+CC VEM+ +  ++YD+ RFG  + R +PR++D+MV++GT+  KMAP ++++Y+QM +PRWVISMGSCAN               D+ +PVD+YVPGCPP  +A L G+L LQ+ + + +    W
Sbjct:   30 LFAQLQDLVAWGRKNSLWPYNFGLSCCYVEMVTSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPDAFLEGLLLLQEAIGKEQRPLSW 177
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NDHK_SYNSC (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9605) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   37 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 176
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NDHK_SYNS9 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9902) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NDHK_SYNR3 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain RCC307) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   34 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 173
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NDHK_SYNPX (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain WH8102) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   37 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 176
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NDHK_SYNPW (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain WH7803) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   41 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NDHK_PROMT (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain NATL2A) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ L+D+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   40 ILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 179
[Close]
BLAST of FC929819 vs. ExPASy Swiss-Prot
Match: NDHK_PROMS (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain AS9601) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
The following BLAST results are available for this feature:
BLAST of FC929819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_ENT383.135e-3346.21NADH-quinone oxidoreductase subunit B OS=Enterobac... [more]
NUOB_CAMFF3.135e-3344.76NADH-quinone oxidoreductase subunit B OS=Campyloba... [more]
NUOB1_NITOC3.135e-3343.62NADH-quinone oxidoreductase subunit B 1 OS=Nitroso... [more]
NDHK_SYNSC3.135e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNS93.135e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNR33.135e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNPX3.135e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNPW3.135e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_PROMT3.135e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROMS3.135e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929819 ID=FC929819; Name=FC929819; organism=Citrus clementina; type=EST; length=762bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGG
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