FC929820

Overview
NameFC929820
Unique NameFC929820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12949 contig Ccv1_Contig12949:141..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: MPG1_SULAC (Putative mannose-1-phosphate guanyltransferase OS=Sulfolobus acidocaldarius GN=mpg1 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 64/202 (31.68%), Postives = 119/202 (58.91%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKL 756
            + A++L GG+ TRLRPL+L+ PK L+    KP++ + + +L +  V  + L++    + +L+ +K+    L   I+   E   LG AGPL     K   +  +   V+  D+ +E  F +++E+H++ G  A++  T+V++PS+YGV++T+    ++ + +EKPK  + N +NAGIY+    +L++I+    SI ++  PKL
Sbjct:    2 VSAIVLAGGYATRLRPLSLTKPKALLPVLGKPLMDYTLYSLASSDVDTIYLSLRVMADKVLDHVKQL--NLQKNIVSVIEESRLGDAGPLKFINSKY--NLSDDVIVVYGDIYAEIDFNKLLEYHQSKGCNATLTATQVEDPSRYGVLITDGH--RLIQIIEKPKTPLSNLVNAGIYVFKKELLNKID--GLSISRDFLPKL 195          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: YBB2_SCHPO (Probable mannose-1-phosphate guanyltransferase OS=Schizosaccharomyces pombe GN=SPBC13G1.02 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.841e-24
Identity = 71/207 (34.30%), Postives = 111/207 (53.62%), Query Frame = 1
Query:  157 ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGI--KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTSIEKEV 744
            A+ILVGG   GTR RPL+  VPKPL +   + MI H + AL  +  V +V L   Y   V  +F+ E  +      +I   +E   LGT G L   RD+++       FV+++DV   +P  E++  H       ++M TKV  ++ S +G +V E STG+V  +V+KP  ++ N I+ GIY+ + ++ D I    E R   +EK++
Sbjct:    5 AVILVGGPSRGTRFRPLSFDVPKPLFKIGGREMIYHHLAALSKIESVKDVFLVGFYDESVFKDFINEVASHFPSFNRIKYLREYNCLGTGGGLYHFRDQILKGHTSNVFVMHADVCCSFPLQELLNVHHEKKALVTLMATKVSKEDASNFGCLVEEPSTGRVLHYVDKPSSYLSNIISCGIYIFDASIFDEIKKAYERRLEEVEKQL 211          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: STRD_STRGR (Glucose-1-phosphate thymidylyltransferase OS=Streptomyces griseus GN=strD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 58/187 (31.02%), Postives = 104/187 (55.61%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI 711
            MKAL+L GG GTRLRP+T +  K LV  ANKP++ + +EA++A G+ +V + +    + ++  + +  ++ G+K+    +++PLG A  + ++RD L +D    F +   D        + +   +A   +A +M+T+V EP  +GV    +S G+V    EKP     +    G+YL +PA+ + +
Sbjct:    1 MKALVLAGGTGTRLRPITHTSAKQLVPVANKPVLFYGLEAIRAAGIIDVGIVVGDTADEIVAAVGD-GSRFGLKVSYIPQSKPLGLAHCVLISRDFLGED---DFIMYLGDNFVVGVVEDSVREFRAARPDAHLMLTRVPEPRSFGVAELSDS-GQVLGLEEKPAHPKSDLALVGVYLFSPAIHEAV 182          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_METM5 (Bifunctional protein glmU OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0513 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 65/190 (34.21%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIE 714
            M A+IL  G GTRL P+T S PKP++  A KP++ H IE ++   V ++ L + ++ E ++ +  E       KI    + + LGT   +  A++ + DD    F VLN DVI E    E++++      E ++ ++KVD P  +GV+       KV   +EKPK      N INAGIY L  +V   +E
Sbjct:    1 MDAIILCAGKGTRLHPITESRPKPMIPIAGKPILEHIIEKIEN-HVEKIYLVVGFEKEKIIEYFNE-----NPKIEYILQEKQLGTGHAVLTAKNFIKDD----FLVLNGDVIFEDSIDEILDY------ENAVALSKVDNPENFGVIELGYD-NKVINLLEKPKKEELTSNFINAGIYKLQNSVFGILE 173          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_METJA (Bifunctional protein glmU OS=Methanocaldococcus jannaschii GN=glmU PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.169e-18
Identity = 62/188 (32.98%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE 714
            M A+IL  G G RLRPLT + PKP++  A KP++ H IE ++ + V  + L + Y+ E ++++ K        KI   ++ E  GT   +  A+D + D+    F V+N D+I E    E +++  A      + V +V  P  +GVVV ++    +E   EKP+    N INAGIY  +  + + IE
Sbjct:    1 MDAIILCAGKGERLRPLTENRPKPMIPIAGKPILQHIIEKVEDL-VDNIYLIVKYKKEKIVDYFKNHP-----KIKFLEQGEIDGTGQAVLTAKDYVDDE----FLVINGDIIFEDDLEEFLKYKYA------VAVKEVKNPENFGVVVLDDENNIIE-LQEKPENPKSNLINAGIYKFDKKIFELIE 171          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RFBF_SALTI (Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhi GN=rfbF PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.067e-17
Identity = 65/217 (29.95%), Postives = 102/217 (47.00%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKE 741
            MKA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+  +   +   +        E          EP             T G L    + + DD  E F     D +++      I+FHKAHG +A++  T    P ++G +  +   G+V  F EKPK   G  IN G ++LNP+V+D I+   T+ E+E
Sbjct:    1 MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGAL--DIQAGQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDATTWEQE 210          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RFBF_SALTY (Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhimurium GN=rfbF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.393e-17
Identity = 65/217 (29.95%), Postives = 102/217 (47.00%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKE 741
            MKA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+  +   +   +        E          EP             T G L    + + DD  E F     D +++      I+FHKAHG +A++  T    P ++G +  +   G+V  F EKPK   G  IN G ++LNP+V+D I+   T+ E+E
Sbjct:    1 MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGAL--DIRAGQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDATTWEQE 210          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_METMP (Bifunctional protein glmU OS=Methanococcus maripaludis GN=MMP1076 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.393e-17
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIE 714
            M A+IL  G GTRL P+T S PKP++  A KP+I H IE ++   V ++ L + YQ E ++++ K+       KI    + + LGT   +  A++ +  D    F VLN DVI E    E++ +      E ++ ++ VD P  +GV+       K+   +EKPK      N INAGIY L  +V   +E
Sbjct:    1 MDAIILCAGKGTRLHPITESRPKPMIPIAGKPIIEHIIEKIEN-HVEKIYLIVGYQKEKIIDYFKD-----NPKIEYILQEKQLGTGHAVLTAKNFIKGD----FLVLNGDVIFEDSIDEILNY------ENAVSLSNVDNPENFGVIELGYD-NKIINLLEKPKKEEITSNLINAGIYKLQNSVFGILE 173          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_METM7 (Bifunctional protein glmU OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0329 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.377e-17
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIE 714
            M A+IL  G GTRL P+T S PKP++  A KP++ H IE ++   V ++ L + ++ E ++ + KE       KI    + + LGT   +  A++ + DD    F VLN D+I E    E++ +      E ++ ++KV  P  +GVV       K+   +EKPK      N INAGIY L   V D +E
Sbjct:    1 MDAIILCAGKGTRLYPITESRPKPMIPIAGKPILEHIIEKIENY-VEKIYLVVGFEKEKIIEYFKE-----NPKIEYILQEKQLGTGHAVLTAKNFIKDD----FLVLNGDIIFEDSIDEILVY------ENAVALSKVGHPENFGVVELGYD-NKIINLLEKPKKEELPSNLINAGIYKLQNNVFDILE 173          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_METVS (Bifunctional protein glmU OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0399 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 64/194 (32.99%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP------KLFVGNKINAGIYLLNPAVLDRIE 714
            M A+IL  G GTRL P+T + PKP++  A KP++ H IE ++   V ++ L + ++ E ++++    E     KI    + + LGT   + +A++ +  D    F VLN DVI E    E + +  A G      ++KVD P  +GV+       KV   +EKP        F  N INAGIY L   V + +E
Sbjct:    1 MDAVILCAGSGTRLYPITENRPKPMIPIAGKPILEHIIEKIEN-HVEKIYLVVGFEKEKIIDYFYGNE-----KIEFIVQEKQLGTGHAVLMAKNYIKGD----FLVLNGDVIFESDILEFLNYENAVG------LSKVDNPENFGVIELGYD-NKVINLLEKPNEDEIKSKFTSNLINAGIYKLENFVFEILE 177          
The following BLAST results are available for this feature:
BLAST of FC929820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MPG1_SULAC2.371e-2531.68Putative mannose-1-phosphate guanyltransferase OS=... [more]
YBB2_SCHPO5.841e-2434.30Probable mannose-1-phosphate guanyltransferase OS=... [more]
STRD_STRGR2.150e-1831.02Glucose-1-phosphate thymidylyltransferase OS=Strep... [more]
GLMU_METM56.255e-1834.21Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METJA8.169e-1832.98Bifunctional protein glmU OS=Methanocaldococcus ja... [more]
RFBF_SALTI1.067e-1729.95Glucose-1-phosphate cytidylyltransferase OS=Salmon... [more]
RFBF_SALTY1.393e-1729.95Glucose-1-phosphate cytidylyltransferase OS=Salmon... [more]
GLMU_METMP1.393e-1734.21Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METM72.377e-1734.21Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METVS2.012e-1632.99Bifunctional protein glmU OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929820 ID=FC929820; Name=FC929820; organism=Citrus clementina; type=EST; length=758bp
GCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTGAGCT
GTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGAACTCAGTTGTTT
GCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACA
ATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTT
GACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGA
TCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTT
TTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATT
TGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCAC
TGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGAT
ACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCC
ATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCA
TCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGTGTGGTGGTTACG
GAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAAACCTAAATTATT
TGTTGGTAACAAAATTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTC
TTGATCGCATTGAGCTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCA
AAATTGCT
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