FC929820

Overview
NameFC929820
Unique NameFC929820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: EI2BG_RAT (Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 64/235 (27.23%), Postives = 106/235 (45.11%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE-----PSKYGVVVTEE--------STGKVEKFV------------------EKPKL-FVGNKINAGIYLLNPAVLDRI--ELRPTSIEKEVFPKL 756
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ KL   I+C  +   +GTA  L     KL  D      VL  D+I++    E+++  +A+    ++++ K  E     P + G   T E        STGK   F+                  + P++ F    ++A +Y L   V+D +      TSI  E+ P L
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--KDVQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDV----LVLGCDLITDVALHEVVDLFRAYDASLAMLMRKGQESTEPVPGQKGKKKTVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENKSITSIRSELIPYL 232          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RMLA_SALAN (Glucose-1-phosphate thymidylyltransferase OS=Salmonella anatum GN=rmlA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 49/195 (25.13%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  148 TMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTS 729
            T K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  + + +D  +   VL  ++   +   +++E        A++    V++P +YGVV  ++S G      EKP     N    G+Y  + +V++  + L+P++
Sbjct:    3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGND--DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQS-GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSA 194          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_PELPD (Bifunctional protein glmU OS=Pelobacter propionicus (strain DSM 2379) GN=glmU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 51/187 (27.27%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  157 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK----PKLFVGNKINAGIYLLNPAVL 702
            A+IL  G GTR++   + V  P+   A +PMI   +EA +  G   VVL + +Q E +    + F+      I C+ + E LGT   +A A   L   +G    +  ++ ++      +++ FH++ G   +++  +++ P  YG V+ +E+ G+V + VE+    P+     +IN+GIY +    L
Sbjct:    6 AIILAAGKGTRMKSGLVKVLHPI---AGRPMIDWPLEAARGAGAAPVVLVVGHQAEAV---RERFQG--AGDIACALQAEQLGTGHAVACAAPALAGFSGTVLILCGDTPLLRGGTLTDLLAFHRSQGAAVTVLTARMENPHGYGRVLRDEA-GRVLRIVEQKDASPQECSVREINSGIYCMEAGFL 183          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_DESRM (Bifunctional protein glmU OS=Desulfotomaculum reducens (strain MI-1) GN=glmU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 53/206 (25.73%), Postives = 103/206 (50.00%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK----PKLFVGNKINAGIYLLN-PAVLDRI-ELRPTSIEKEVF 747
            + A+IL  G GTR++    ++PK L +   +PM+ H + ++ A GV + V+   +  E + +F       +G K     + E LGTA  L  A  +L D  G    V  ++ ++     A++ ++H   G  A+++  ++ +P+ YG V+   + G V   VE+    P+    ++IN G+Y    P + + + E+ P +++ E +
Sbjct:    3 LAAVILAAGKGTRMKS---NLPKVLHQLCGRPMLSHVLNSVVAAGVDKTVVVAGFGAEQVTDF-------VGEKARVVLQREQLGTAHALLQAEGELTDYPGHLLVVCGDTPLLRAETLAKLADYHCESGAVATLLTAEMADPTGYGRVI-RTTEGNVSHIVEQKDASPEELNVHEINTGVYCFKVPGLFNALKEISPANVQGEYY 197          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RMLA_STRMU (Glucose-1-phosphate thymidylyltransferase OS=Streptococcus mutans GN=rmlA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 46/185 (24.86%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 705
            MK +IL GG GTRL PLT +  K L+   +KPMI + +  L   G+ ++++    Q       L +  ++ GIK+  +++  P G A    +  + + DD      +L  ++      + M++   +    A++   +V +P ++GVV  +     +    EKP+    +    G+Y  + +V+D
Sbjct:    1 MKGIILAGGSGTRLYPLTRAASKQLMPVYDKPMIYYPLSTLMLAGIKDILIISTPQDLPRFKELLQDGSEFGIKLSYAEQPSPDGLAQAFIIGEEFIGDD--HVALILGDNIYYGPGLSRMLQKAASKESGATVFGYQVKDPERFGVVEFDNDRNAI-SIEEKPEHPKSHYAVTGLYFYDNSVVD 182          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLGC_BACCN (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 58/196 (29.59%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  157 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKII-----CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL 702
            A++L GG G+RL  LT ++ KP V F  K  I+   +      G+  V +   YQP  + N++    A        G+ ++      S      GTA  +    + L     E   +L+ D I +  +++M+++H A   + SI V +V  DE S++G++ T E    VE F EKP+    N  + GIY+ N A+L
Sbjct:    9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCSNSGIETVGILTQYQPLELHNYIGIGNAWDLDRVNGGVTVLPPYAEASGVKWYTGTASAIYQNMNFLRQYNPEYVLILSGDHIYKMDYSKMLDYHIAKEADVSISVIEVPWDEASRFGIMNTNEEMEIVE-FEEKPQFPKSNLASMGIYIFNWAIL 203          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 564
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RMLA_XANCP (Glucose-1-phosphate thymidylyltransferase OS=Xanthomonas campestris pv. campestris GN=rmlA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 50/185 (27.03%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 705
            K +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ ++++      + +   L    A+ G+ I  + +  P G A    + RD +    G+P   VL  ++   +   + +    A    A++    V++P +YGV   ++  GKV    EKP+    N    G+Y  +    D
Sbjct:    5 KGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIINTPHEQALFQSLLGDGAQWGVNIQYAVQPSPDGLAQAYLIGRDFV---GGKPSCLVLGDNIFHGHGLTDTLRRADAREQGATVFGYWVNDPERYGVAEFDQH-GKVIDIAEKPEKPRSNYAVTGLYFYDGKASD 185          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RMLA_XANCB (Glucose-1-phosphate thymidylyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rmlA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 50/185 (27.03%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 705
            K +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ ++++      + +   L    A+ G+ I  + +  P G A    + RD +    G+P   VL  ++   +   + +    A    A++    V++P +YGV   ++  GKV    EKP+    N    G+Y  +    D
Sbjct:    5 KGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIINTPHEQALFQSLLGDGAQWGVNIQYAVQPSPDGLAQAYLIGRDFV---GGKPSCLVLGDNIFHGHGLTDTLRRADAREQGATVFGYWVNDPERYGVAEFDQH-GKVIDIAEKPEKPRSNYAVTGLYFYDGKASD 185          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 564
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
The following BLAST results are available for this feature:
BLAST of FC929820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EI2BG_RAT8.749e-1227.23Translation initiation factor eIF-2B subunit gamma... [more]
RMLA_SALAN1.143e-1125.13Glucose-1-phosphate thymidylyltransferase OS=Salmo... [more]
GLMU_PELPD1.143e-1127.27Bifunctional protein glmU OS=Pelobacter propionicu... [more]
GLMU_DESRM1.143e-1125.73Bifunctional protein glmU OS=Desulfotomaculum redu... [more]
RMLA_STRMU2.545e-1124.86Glucose-1-phosphate thymidylyltransferase OS=Strep... [more]
GLGC_BACCN2.545e-1129.59Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
EI2BG_HUMAN2.545e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]
RMLA_XANCP3.324e-1127.03Glucose-1-phosphate thymidylyltransferase OS=Xanth... [more]
RMLA_XANCB3.324e-1127.03Glucose-1-phosphate thymidylyltransferase OS=Xanth... [more]
EI2BG_MACFA3.324e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929820 ID=FC929820; Name=FC929820; organism=Citrus clementina; type=EST; length=758bp
GCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTGAGCT
GTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGAACTCAGTTGTTT
GCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACA
ATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTT
GACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGA
TCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTT
TTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATT
TGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCAC
TGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGAT
ACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCC
ATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCA
TCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGTGTGGTGGTTACG
GAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAAACCTAAATTATT
TGTTGGTAACAAAATTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTC
TTGATCGCATTGAGCTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCA
AAATTGCT
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