FC929820

Overview
NameFC929820
Unique NameFC929820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12949 contig Ccv1_Contig12949:141..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: EI2BG_BOVIN (Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI--NYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 573
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++    + Q  +  +F K    K+ + I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +AH    ++++ K  E
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKDVQKALCADFNK---MKMKLDIVCIPDEADMGTADSLRHIYQKLKTDV----LVLSCDLITDVALHEVVDLFRAHDASLAMLMRKGQE 138          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RMLA_SALTY (Glucose-1-phosphate thymidylyltransferase OS=Salmonella typhimurium GN=rmlA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 48/195 (24.62%), Postives = 92/195 (47.18%), Query Frame = 1
Query:  148 TMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTS 729
            T K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   +++E        A++    V++P +YGVV  ++  G      EKP     N    G+Y  + +V++  + L+P++
Sbjct:    3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSA 194          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: RMLA3_ECOLX (Glucose-1-phosphate thymidylyltransferase OS=Escherichia coli GN=rmlA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 50/196 (25.51%), Postives = 91/196 (46.43%), Query Frame = 1
Query:  148 TMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD--RIELRPTS 729
            T K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  D +  D  +   VL  ++   +   +++E        A++    V++P +YG VV  ++ G      EKP     N    G+Y  +  V++  R  L+P++
Sbjct:    3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEDFIGGD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYG-VVEFDNNGTAISLEEKPLEPKSNYAVTGLYFYDNDVVEMARKNLKPSA 195          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_PELTS (Bifunctional protein glmU OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glmU PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 56/206 (27.18%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK----PKLFVGNKINAGIYLLNPA-VLDRIE-LRPTSIEKEVF 747
            + A+IL  G GTR++     +PK L     +PM+ + + A+ A G+ ++V+   Y  E +    +E E    + +    + E LGTA  L  A   L    G+   +  ++ +I     A++  FH+  G  A+++  + D+P+ YG V+  +  G V K VE+    P   +  +IN GIY    A + D ++ +RP + + E +
Sbjct:    3 LAAVILAAGRGTRMKS---KLPKVLHRVCGRPMLSYIVNAVAAAGIKKIVVVAGYGAEQVA---REVEGLAQVAL----QAEQLGTAHALLQAGPFLSGFAGKVLVLCGDTPLIEAGTLAKLAGFHRTAGAAATLLTAEPDDPAGYGRVI-RDGRGNVIKIVEEKDASPAEKLIREINTGIYCFEAAGLFDALKGIRPANAQGEYY 197          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLMU_CLOTE (Bifunctional protein glmU OS=Clostridium tetani GN=glmU PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 53/194 (27.32%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  157 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIIC-SQETEPLGTAGPLALARDKLIDDTGE-PFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVE-----KPKLFVGNKINAGIYLLN-PAVLDRIE 714
            A++L  G G R++  T   PK L +   K M+ H I+AL+   + +V + +  +        KE + K   + +  S + + LGT   +  A++ L+   G    F  ++ +I+      ++E+H+ +G   +I+ + +D PS YG V+  E+ G+V+K +E     K +L +  +INAG+Y  N  A+L+ ++
Sbjct:    5 AILLAAGEGKRMKSAT---PKVLHKVCGKEMVNHVIDALREANIEDVNVIVGKKA-------KEVQLKTESRSVSFSFQEQQLGTGHAVKCAKEFLLGKEGNVAIFTGDAPLITSKTIKTLMEYHETNGFHGTILTSIIDNPSGYGRVL-RENNGEVDKIIEHKDCLKEELKI-KEINAGMYCFNIQALLEALD 186          
BLAST of FC929820 vs. ExPASy Swiss-Prot
Match: GLGC_MYCMO (Glucose-1-phosphate adenylyltransferase OS=Mycoplasma mobile GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 57/201 (28.36%), Postives = 95/201 (47.26%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKL---------GIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL 702
            M A+IL GG GTRL+ LT  + KP V F  K  I+   +      G+  V +   Y+P   L+ LK   + +         G+ ++     E       GTA  +    D + +       +L+ D I +  +++M++FHK      +I    V  +E S++G++ T E+   VE+F EKPK+    K + G+Y+ N  +L
Sbjct:    6 MIAMILAGGQGTRLKNLTKKIAKPAVPFGAKYRIIDFTLSNCINSGIDTVGVLTQYRP---LSLLKHIGSGIPFDLNRLNGGVVLLSPYVKESEGYWYAGTAHAIFENIDFMNEYDPTYALILSGDHIYKMDYSKMLDFHKEKNANVTIATINVSFEEASRFGILNTNEN-NMVEEFEEKPKIPKSTKASMGVYIFNYQLL 202          
The following BLAST results are available for this feature:
BLAST of FC929820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
EI2BG_BOVIN4.342e-1129.58Translation initiation factor eIF-2B subunit gamma... [more]
RMLA_SALTY5.671e-1124.62Glucose-1-phosphate thymidylyltransferase OS=Salmo... [more]
RMLA3_ECOLX5.671e-1125.51Glucose-1-phosphate thymidylyltransferase OS=Esche... [more]
GLMU_PELTS7.406e-1127.18Bifunctional protein glmU OS=Pelotomaculum thermop... [more]
GLMU_CLOTE7.406e-1127.32Bifunctional protein glmU OS=Clostridium tetani GN... [more]
GLGC_MYCMO7.406e-1128.36Glucose-1-phosphate adenylyltransferase OS=Mycopla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AF03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929820 ID=FC929820; Name=FC929820; organism=Citrus clementina; type=EST; length=758bp
GCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTGAGCT
GTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGAACTCAGTTGTTT
GCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACA
ATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTT
GACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGA
TCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTT
TTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATT
TGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCAC
TGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGAT
ACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCC
ATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCA
TCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGTGTGGTGGTTACG
GAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAAACCTAAATTATT
TGTTGGTAACAAAATTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTC
TTGATCGCATTGAGCTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCA
AAATTGCT
back to top