FC929824

Overview
NameFC929824
Unique NameFC929824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.889e-80
Identity = 151/246 (61.38%), Postives = 188/246 (76.42%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---NSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I V VVD++ ++I  WNSD LPIYEPGLD +V   RG+NLFFS+D+ K ++EAD++F+S+NTPTK  G G G A DL Y ES +R IA  +   KIVVEKSTVPVK AE+I  IL     N++ +KF +LSNPEFLAEGTA++DL NPDRVLIGG  +PEG +AV  L  +Y +WVP  +I+TTN WS+ELSKL ANAFLAQRISS+N++SA+CEATGA +S VA AVG D++IG KFL A VG
Sbjct:   33 PHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYDTRIGSKFLQASVG 278          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: TUAD_BACSU (UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subtilis GN=tuaD PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.260e-40
Identity = 98/242 (40.50%), Postives = 145/242 (59.92%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGL-DGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-IKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            +V   DI  S+I +  +  +PIYEPGL D V K    + L F+ D+   +  +DI+++++ TP    G      ADLTY ++AA+ I +     K++V KSTVPV T + ++ I+   SKG   F ++SNPEFL EG+AI D  N +R +IG        KA   +++++  +     ++ TNL SAE+ K AANAFLA +IS +N ++ +CE  GA+VS VA  VG DS+IG KFL A +G
Sbjct:   26 KVVCCDIDESKIRSLKNGVIPIYEPGLADLVEKNVLDQRLTFTNDIPSAIRASDIIYIAVGTPMSKTG-----EADLTYVKAAAKTIGEHLNGYKVIVNKSTVPVGTGKLVQSIVQKASKGRYSFDVVSNPEFLREGSAIHDTMNMERAVIGSTS----HKAAAIIEELHQPF--HAPVIKTNLESAEMIKYAANAFLATKISFINDIANICERVGADVSKVADGVGLDSRIGRKFLKAGIG 256          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: YWQF_BACSU (UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subtilis GN=ywqF PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.978e-37
Identity = 93/242 (38.43%), Postives = 146/242 (60.33%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDHLPIYEPGLDGVV-KQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW-VPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            V  +DI   +I+       PI+EPGL+ ++ K      L F T  +K +++ADI+F+++ TP K+ G      A+L     AA+ IA   K D +VV KSTVPV T + I  ++T H ++ +   + SNPEFL EG+AI D F+ DR++IG  +    +K    L++++  + +P YQ   T++ SAE+ K A+NAFLA +IS +N +S +CE  GA++  VA+ +G D +IG +FL A +G
Sbjct:   26 VTCIDIDAHKIDEMRKGISPIFEPGLEELMRKNTADGRLNFETSYEKGLAQADIIFIAVGTPQKSDG-----HANLEQITDAAKRIAKHVKRDTVVVTKSTVPVGTNDLINGLITEHLAEPVSISVASNPEFLREGSAIYDTFHGDRIVIGTAD----EKTANTLEELFRPFQIPIYQ---TDIRSAEMIKYASNAFLATKISFINEISNICEKVGADIEAVAYGMGQDKRIGSQFLKAGIG 255          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.755e-37
Identity = 91/243 (37.45%), Postives = 148/243 (60.91%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIAD-VSKSD-KIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-YQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            +V  +DI  S++ A N    P+YE GL+G++K+   KNL F+T   K + ++D++F+ + TP    G      ADL +  SA   I + + K D K++V KSTVPV T   ++++L    K     ++SNPEFL EG A+ D FNP+RV++G  E    +K ++ +++VY ++  +    + TN  +AEL K A+NAFLA +IS +N ++ L +   A++  +++A+G D +IG KFLNA +G
Sbjct:   25 DVVGIDIDESKVKALNRGECPLYEEGLEGLLKKHVNKNLTFTTSY-KPIKDSDVIFLCVGTPQDKDG-----NADLRFLFSAVEKIKETIDKEDYKVIVIKSTVPVGTNRRVKELL----KDYNVDVVSNPEFLREGIAVYDFFNPERVILGF-ENLNNKKPIEIMEEVYKYFKDKNIPFVITNWETAELIKYASNAFLATKISFINELAKLSDKVKADIKTISYAMGLDPRIGNKFLNAGIG 256          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_RHIME (UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti GN=rkpK PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.187e-36
Identity = 92/240 (38.33%), Postives = 140/240 (58.33%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVV-KQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIG--GRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNA 730
            +V  VD    +I+A     +PI+EPGLD +V        L F+ D+   V+ +D+VF+++ TP++    G G A DL+Y  +AAR IA   +   +VV KSTVPV T + +E+I+   +      ++SNPEFL EG AI+D   PDR++IG  G +    +   +  + +Y +  P   ++ T   ++EL K A NAFLA +I+ +N ++ LCE  GANV  VA  +G D +IG KFL+A
Sbjct:   25 DVVCVDKDEGKISALKKGQIPIFEPGLDHLVASNVASGRLNFTDDLKTAVAASDVVFIAVGTPSRR---GDGHA-DLSYVYAAAREIAANLQGFTVVVTKSTVPVGTGDEVERIIRETNPAADVTVVSNPEFLREGAAIEDFKRPDRIVIGVDGSDGRAREVMTEVYRPLYLNQSP---LVFTTRRTSELIKYAGNAFLAMKITFINEIADLCEKVGANVQDVARGIGLDGRIGSKFLHA 257          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 89/246 (36.18%), Postives = 138/246 (56.10%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVK-QCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQ-ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            +V  V+    R+       +PIYEPGL+ +++ Q     L F+  + + +++A++VF+++ TP    G     +ADL++  + A  +    +   IVV KSTVPV TAE +E+I    L    K  +  + SNPEFL EG+A+ D   PDRV+IG  ET  G+     L+ +YA ++  ++ +L      AE SK AANAFLA +IS +N M+ LC  TG ++  V   +G+D +IG  F+ A  G
Sbjct:   25 QVRCVERDRERVARLRRGEMPIYEPGLESILRDQLDAARLTFTASLAEGLADAEVVFIAVGTPCGEDG-----SADLSHVLAVAEQLGAQLRQACIVVNKSTVPVGTAERVEEIIRLGLARRRKRFRVAVASNPEFLKEGSAVDDFRRPDRVIIGSAETQAGE----TLRQLYAPFLRNHERVLLMGRREAEFSKYAANAFLATKISFMNEMAGLCALTGVDIEDVRRGMGSDKRIGTHFIYAGCG 261          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: YTCA_BACSU (Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacillus subtilis GN=ytcA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.956e-33
Identity = 86/242 (35.54%), Postives = 138/242 (57.02%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN--SKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            ++   D  V +I       +P YEPGL   + +C   NL FS++V   + E  ++F+++ TP ++ G     +AD    +S    +++  +S K ++ KSTVP  T E I K L  +  SK + F+I+SNPEFL EG A+ D+ +PD+ +IG +E      A+  +K +Y H   +   + T+L  AEL K A N FLA +IS +N M+ +CEA  +++S ++ A+G D +IG  FL A +G
Sbjct:   25 DMICTDKDVKKIGQLKKGVIPFYEPGLSDAILRCG--NLSFSSEVKSSMEECPVIFIAVGTPPRSDG-----SADTKALQSVIGDLSEAIRSYKTIITKSTVPPGTNENIAKQLIASGVSKNL-FNIVSNPEFLREGNALYDMLHPDKTVIGVQEEDHVSAAI--VKSIYKHI--DTPFIVTSLAGAELIKYANNFFLAAKISFINEMARICEAYQSDISDISRAIGLDPRIGKHFLQAGIG 254          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_RICFE (UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN=udg PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.268e-32
Identity = 84/238 (35.29%), Postives = 134/238 (56.30%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKN-LFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-YQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNA 730
            V  +D    +I+  N   LPIYE  LD  +KQ    N L F+   +  +  A+ +F+++ TP+K  G      ADL Y   A   +++    D ++V KSTVP  +   I   L   SKG  F++ SNPEFL EG+A++D   PDR+++G       +++ + L+ +YA  + +  + + T+L ++EL K A+N+FLA +I+ +N M+ LCE  G N+  ++  VG D +IG  FLNA
Sbjct:   26 VTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALEANRLKFTNIYNNELQNAEAIFITVGTPSKESG-----EADLKYVYDAIDKVSEHINKDCLIVIKSTVPPDSCSNIIAYL--KSKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEEILRKIYAPLIEQGAKFVVTDLVTSELIKYASNSFLATKIAFINEMADLCEKIGGNIEDLSKGVGLDQRIGQNFLNA 252          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_RICTY (UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN=udg PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 86/234 (36.75%), Postives = 129/234 (55.13%), Query Frame = 2
Query:   35 DISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-YQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNA 730
            D+ +S++N      LPIYE  LD  +KQ      L F+          D VF+++ TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F++ SNPEFL EG+A++D   PDR+++G       Q++   L+ +YA  + +  + L TNL ++EL K A+N+FLA +I+ +N M+ LCE  GAN+  ++  VG D +IG  FLNA
Sbjct:   33 DVKISKLN---KKILPIYEAKLDEYLKQALESDRLKFTNIYSNDFRNVDAVFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNQESEALLRTIYAPLIEQGVKFLVTNLVTSELIKYASNSFLATKIAFINEMADLCEKIGANIKDLSQGVGLDQRIGRNFLNA 252          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_RICCN (UDP-glucose 6-dehydrogenase OS=Rickettsia conorii GN=udg PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.766e-31
Identity = 86/237 (36.29%), Postives = 132/237 (55.70%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNA 730
            V  +D    +I+  N   LPIYE  LD  +KQ      L F+   +  +  AD +F+++ TP+K    G GEA DL Y   A   + +    D ++V KSTVP  +   I   L   S+G  F++ SNPEFL EG+A++D   PDR++IG       +++   L+ +YA  +   + + T+L ++EL K A+N+FLA +I+ +N M+ LCE  G N+  ++  VG D +IG  FLNA
Sbjct:   26 VTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALESDRLKFTNIYNNELQNADAIFITVGTPSK----GLGEA-DLKYVYDAIDKVFEHINKDCLIVIKSTVPPGSCSNIIAYL--KSRGFSFNVASNPEFLREGSAVEDFLYPDRIVIG----VNNKESEAILRKIYAP-LQGVKFVVTDLVTSELIKYASNSFLATKIAFINEMADLCEKIGGNIKDLSKGVGLDQRIGQNFLNA 250          
The following BLAST results are available for this feature:
BLAST of FC929824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
UGDH_CAEEL1.889e-8061.38UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
TUAD_BACSU3.260e-4040.50UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subti... [more]
YWQF_BACSU1.978e-3738.43UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subti... [more]
Y1054_METJA5.755e-3737.45Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]
UDG_RHIME2.187e-3638.33UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti ... [more]
UDG_PSEAE2.047e-3436.18UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
YTCA_BACSU2.956e-3335.54Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacil... [more]
UDG_RICFE3.268e-3235.29UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN... [more]
UDG_RICTY5.574e-3236.75UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN... [more]
UDG_RICCN2.766e-3136.29UDP-glucose 6-dehydrogenase OS=Rickettsia conorii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929824 ID=FC929824; Name=FC929824; organism=Citrus clementina; type=EST; length=740bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCATCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGATAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAATCAATA
CCCCAACCAAAACTCAAGGTCTCGGTGCTGGCGAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAAGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCACATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAAGATGTGTATGCACACTGGGTCCCAGAATACCAAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCACGTGGCATTTGCTGTTGGTACAGAC
TCTAAGATTGGGCCCAAATTCTTGAATGCTATTGTTGGGT
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