FC929824

Overview
NameFC929824
Unique NameFC929824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_RICPR (UDP-glucose 6-dehydrogenase OS=Rickettsia prowazekii GN=udg PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30
Identity = 82/234 (35.04%), Postives = 127/234 (54.27%), Query Frame = 2
Query:   35 DISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-YQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNA 730
            D+ +S++N      LPIYE  LD  +K       L F+          D +F+++ TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F++ SNPEFL EG+A++D   PDR+++G       +++   L+ +YA  + +  + L TNL ++EL K  +N+FLA +I+ +N M+ LCE  GAN+  ++  VG D +IG  FLNA
Sbjct:   33 DVKISKLN---KKILPIYEAKLDEYLKHALESDRLKFTNIYSNEFRNFDAIFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEALLRKIYAPLIEQGAKFLVTNLVTSELIKYVSNSFLATKIAFINEMADLCEKIGANIKDLSQGVGLDQRIGRNFLNA 252          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.589e-29
Identity = 81/239 (33.89%), Postives = 135/239 (56.49%), Query Frame = 2
Query:   23 VAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTY-WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-YQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNA 730
            V  +D   ++I+  N   LPIYE  LD    Q    + L F++  ++ +   + VF+++ TP+K  G      ADL+Y +E+  ++   ++K D ++V KSTVP  +   I   L    KG  F++ SNPEFL EG A++D   PDR++IG       +++   L+ +Y        +++ T+L +AEL K  +N+FLA +I+ +N M+ LCE  GA++ +++  +G D +IG  FLNA
Sbjct:   26 VTCLDNDEAKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASG-----EADLSYVYEAIDKISLHINK-DCLIVIKSTVPPNSCNNIINYL--KEKGFSFNVASNPEFLREGNAVEDFLYPDRIVIG----VNNKESEDILRKIYMPLTDNGAELVITDLVTAELIKYGSNSFLATKIAFINEMANLCEKIGADIKNLSKGIGLDKRIGTAFLNA 252          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: ALGD_PSEAE (GDP-mannose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=algD PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 67/238 (28.15%), Postives = 114/238 (47.90%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKN-LFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKI 709
            EV  VD+S ++I+  N    PI EPGL+ +++Q R    L  +TD  K V ++D+ F+ + TP+K  G       DL Y E+  R     I + S+   +VV  + +P      +  ++   S    G+ F + +NPEFL E TAI+D   P   +IG  +   G      L+++Y     +  I+   +  AE+ K   N + A +++  N +  + +A G +   V   +  D K+
Sbjct:   25 EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKL 251          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 67/218 (30.73%), Postives = 109/218 (50.00%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            +V  VD++  R+N   +  L I EPGL  +VK     KNL    +V    +EAD   + + TP   +  G+ +  DL+Y  SA   I    K   ++V +ST+P +T + I + L       K ++   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E QI TT+  +AE+ KL  N +    I+  N  + +C+  G NV
Sbjct:   34 DVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVRTSATEADAFIICVPTPALAKEDGS-KKCDLSYVMSAVEAILPFVKDGNLIVIESTIPPETTKKIYETLNK-----KIYVAHCPERVLPGKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGQIYTTDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNV 235          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 66/218 (30.28%), Postives = 107/218 (49.08%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            EV  VD++  R+N   +  L I EPGL  +VK     KNL   T  +    EAD   + + TP      G+ +  DLTY  SA + I    K   ++V +ST+P +T + I + +       K ++   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV
Sbjct:   34 EVVGVDVNEKRVNHIKNGELKIEEPGLLTLVKGAINSKNLNVQTSAE----EADAFIICVPTPALENEDGS-KKCDLTYVMSAVQAIIPFLKDGNLIVVESTIPPETTKKIYETINK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNV 235          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_ECO11 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O111:H- GN=ugd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 71/244 (29.10%), Postives = 111/244 (45.49%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPT----KTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            EV  +DI  +++   N    PI +  ++  +     K L F    DK+ +  D  +V I TPT    KT              ES  R + D++ +  +V+ KST+PV     +++ L     GI  +I  +PEFL EG A+ D  +P R++IG R    G+ A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N   +   V  D +IG  + N   G
Sbjct:   24 EVVALDIVPTKVEMLNQKKSPIVDKEIEEYLAT---KQLNFRATTDKYDAYRDGTYVIIATPTDYDPKTNYFNTSSV------ESVIRDVVDINPNAVMVI-KSTIPVGFTNLLKERL-----GID-NIFFSPEFLREGRALYDNLHPSRIVIGERSERAGRFAALLQEGAVKKDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFG 248          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: ALGD_PSEPK (GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 68/236 (28.81%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQ-CRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQG-LGAGEAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTD 700
            EV  VD+S ++I+  N    PI EPGL+ +++Q      L  +TD  + +  +D+  + + TP+K  G LG      L Y ES  R    V+ D ++   IVV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  ++  G      L+ +Y     +  I+   +  AE+ K   N + A +++  N +  + +A G +   V   V  D
Sbjct:   25 EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGIANGRLRGTTDFAEAIRASDVSMICVGTPSKKNGDLG------LEYIESVCREIGYVLRDTTRRHTIVVRSTVLPGTVKNVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDQPPMTVIGELDSASGD----ILQALYEEL--DAPIIRKPIEVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQD 248          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: ALGD_PSESY (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 69/239 (28.87%), Postives = 112/239 (46.86%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQ--CRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKI 709
            EV  VDIS ++I+  N+   PI EPGL+ ++++    GK L  +TD  + +   D+  + + TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +   V   V  D  +
Sbjct:   25 EVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKAL 251          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_ECO57 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O157:H7 GN=ugd PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 71/242 (29.34%), Postives = 110/242 (45.45%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDK--IVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  +DK+ +  D  +V I TPT           +     S   VI DV + +   ++V KSTVPV   EA+ K      K    +I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N   +   V  D +IG  + N   G
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTEAMHK------KYRTENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFG 248          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG8_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=ugd PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.056e-14
Identity = 68/242 (28.10%), Postives = 114/242 (47.11%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSK--SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            EV  +DI  ++++  N    PI +  ++  +     K+L F    DK+ +  +  +V I TPT           +     S   VI DV++   + ++V KST+PV   ++I++ L     GI  +++ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N   +   V  D +IG  + N   G
Sbjct:   24 EVVALDIVQAKVDMLNKKQSPIVDKEIEEYLAT---KDLNFRATTDKYDAYKNADYVIIATPTDYD-----PKTNYFNTSSVEAVIRDVTEINPNAVMVIKSTIPVGFTKSIKERL-----GID-NLIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFG 248          
The following BLAST results are available for this feature:
BLAST of FC929824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
UDG_RICPR3.995e-3035.04UDP-glucose 6-dehydrogenase OS=Rickettsia prowazek... [more]
UDG_RICBR2.589e-2933.89UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]
ALGD_PSEAE8.640e-1728.15GDP-mannose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
WECC_METMP4.288e-1630.73UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METM71.629e-1530.28UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
UDG_ECO112.779e-1529.10UDP-glucose 6-dehydrogenase OS=Escherichia coli O1... [more]
ALGD_PSEPK3.630e-1528.81GDP-mannose 6-dehydrogenase OS=Pseudomonas putida ... [more]
ALGD_PSESY6.192e-1528.87GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
UDG_ECO578.087e-1529.34UDP-glucose 6-dehydrogenase OS=Escherichia coli O1... [more]
UDG8_ECOLX1.056e-1428.10UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929824 ID=FC929824; Name=FC929824; organism=Citrus clementina; type=EST; length=740bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCATCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGATAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAATCAATA
CCCCAACCAAAACTCAAGGTCTCGGTGCTGGCGAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAAGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCACATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAAGATGTGTATGCACACTGGGTCCCAGAATACCAAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCACGTGGCATTTGCTGTTGGTACAGAC
TCTAAGATTGGGCCCAAATTCTTGAATGCTATTGTTGGGT
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