FC929824

Overview
NameFC929824
Unique NameFC929824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: ALGD_PSESM (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato GN=algD PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.056e-14
Identity = 68/239 (28.45%), Postives = 112/239 (46.86%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQ--CRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKI 709
            +V  VDIS ++I+  N+   PI EPGL+ ++++    GK L  +TD  + +   D+  + + TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +   V   V  D  +
Sbjct:   25 DVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGLATGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKNTRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKAL 251          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_SHIFL (Putative UDP-glucose 6-dehydrogenase OS=Shigella flexneri GN=udg PE=5 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 72/243 (29.63%), Postives = 110/243 (45.27%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  +DK+ +  D  +V I TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N   +   V  D +IG  + N   G
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFG 248          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_ECOLI (UDP-glucose 6-dehydrogenase OS=Escherichia coli (strain K12) GN=ugd PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 72/243 (29.63%), Postives = 111/243 (45.68%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  +DK+ +  D  +V I TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P   +L T+   AE  KL AN +LA R++  N + +  E+ G N   +   V  D +IG  + N   G
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---MLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFG 248          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_ECOL6 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O6 GN=ugd PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 72/243 (29.63%), Postives = 110/243 (45.27%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            EV  +DI  SR+   N    PI +  +   ++  +   + F+  +DK+ +  D  +V I TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N   +   V  D +IG  + N   G
Sbjct:   24 EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFG 248          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: ALGD_PSESH (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. phaseolicola GN=algD PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 68/239 (28.45%), Postives = 112/239 (46.86%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQ--CRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKI 709
            +V  VDIS ++I+  N+   PI EPGL+ ++++    GK L  +TD  + +   D+  + + TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +   V   V  D  +
Sbjct:   25 DVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKAL 251          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: ALGD_AZOVI (GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 66/242 (27.27%), Postives = 111/242 (45.87%), Query Frame = 2
Query:    8 GPSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQ-CRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKI 709
            G   EV  VDIS ++I+  N    PI EPGL  ++ +  +   L  +T+V + V   ++  + + TP+K  G       +L Y E   R     + D ++   +VV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G++    L  +YA    +  I+   +  AE+ K   N + A +++  N +  + +A G +   V   V  D+K+
Sbjct:   21 GRGHEVVGVDISAAKIDMINQGKSPIVEPGLGELLAEGVKTGRLRGTTNVTEAVLATELSMLCVGTPSKLNG-----DLELDYIEEVCRQMGSALRDKTERHTVVVRSTVLPGTVHNVVIPILEEFSGKKAGVDFGVAVNPEFLRESTAIKDYNFPPMTVIGELDKASGRR----LASIYAEL--DAPIVRKGIAVAEMIKYTCNVWHATKVTFANEIGNIAKAAGVDGREVMEVVCMDNKL 251          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: EPSD1_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 63/227 (27.75%), Postives = 105/227 (46.26%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            EV  VDI+   ++  N   + I EP LD +V+    +    +T   +    AD   +++ TP         +  DL+Y E+AAR IA V K   +VV +ST PV   E +   L+     + F           +   PE +  G  +++L   DR++  G  TP+  +A + L +++       + + T+  +AE+ KL  NAF    I+  N +S +C+  G NV
Sbjct:   34 EVIGVDINQHAVDTINQGRIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLDN-----KQPDLSYIEAAARAIAPVLKRGDLVVLESTSPVGATEQLSDWLSAQRPDLSFPHQQGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPKCSEAAQRLYELFVRG----RCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNV 246          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_METM5 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 64/218 (29.36%), Postives = 106/218 (48.62%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVK-QCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            EV  VD++  R+N   +  L I EPGL  +VK     KNL    +V    +EAD   + + TP      G+ +  DLTY   A + I    K   ++V +ST+P +  + I + +       K ++   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV
Sbjct:   34 EVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVQTSATEADAFIICVPTPALENEDGS-KKCDLTYVMGAVQNIIPFLKEGNLIVIESTIPPEITKKIYETIDK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNV 235          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: EPSD2_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 62/227 (27.31%), Postives = 104/227 (45.81%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            E+  VDI+   ++  N   + I EP LD +V+    +    +T   +    AD   +++ TP         +  DLTY E+AA+ IA V K   +VV +ST PV   E +   L+     + F           +   PE +  G  +++L   DR++  G  TP   +A + L +++       + + T+  +AE+ KL  NAF    I+  N +S +C+  G NV
Sbjct:   34 ELIGVDINQHAVDTINQARIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLED-----KQPDLTYIEAAAKAIAPVLKRGDLVVLESTSPVGATEQLSAWLSEQRSDLSFPHQLGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPRCSQAAQRLYELFVRG----RCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNV 246          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG_SALTY (UDP-glucose 6-dehydrogenase OS=Salmonella typhimurium GN=udg PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 69/245 (28.16%), Postives = 108/245 (44.08%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPT----KTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            +V  +DI  SR+   N    PI +  +   +K+    N+ F   +DK  +  +  +V I TPT    KT              ES  + +  ++ +  +++ KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D   P R++IG +     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E  G N   +   V  D +IG  + N   G
Sbjct:   24 DVVALDIVPSRVELLNDRISPIVDKEIQQFLKE---DNIRFRATLDKFDAYQNADYVIIATPTDYDPKTNYFNTSSV------ESVMQDVISINPAAVMII-KSTVPVGFTAAMRQKFATEN-------IIFSPEFLREGKALYDNLYPSRIVIGEQSERAREFAALLQEGAIKQEIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAETLGLNTRQIIEGVCLDPRIGNHYNNPSFG 248          
The following BLAST results are available for this feature:
BLAST of FC929824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ALGD_PSESM1.056e-1428.45GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
UDG_SHIFL1.379e-1429.63Putative UDP-glucose 6-dehydrogenase OS=Shigella f... [more]
UDG_ECOLI1.379e-1429.63UDP-glucose 6-dehydrogenase OS=Escherichia coli (s... [more]
UDG_ECOL61.379e-1429.63UDP-glucose 6-dehydrogenase OS=Escherichia coli O6... [more]
ALGD_PSESH1.379e-1428.45GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_AZOVI1.801e-1427.27GDP-mannose 6-dehydrogenase OS=Azotobacter vinelan... [more]
EPSD1_RALSO4.013e-1427.75NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
WECC_METM55.242e-1429.36UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
EPSD2_RALSO5.242e-1427.31NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
UDG_SALTY8.941e-1428.16UDP-glucose 6-dehydrogenase OS=Salmonella typhimur... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929824 ID=FC929824; Name=FC929824; organism=Citrus clementina; type=EST; length=740bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCATCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGATAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAATCAATA
CCCCAACCAAAACTCAAGGTCTCGGTGCTGGCGAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAAGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCACATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAAGATGTGTATGCACACTGGGTCCCAGAATACCAAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCACGTGGCATTTGCTGTTGGTACAGAC
TCTAAGATTGGGCCCAAATTCTTGAATGCTATTGTTGGGT
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