FC929824

Overview
NameFC929824
Unique NameFC929824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UDG5_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=kfiD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 65/240 (27.08%), Postives = 110/240 (45.83%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            EV   D    +++  N    PI +  ++  +     K L F    +K+ +  +  +V I TPT           D +  E+  R + +++ +  I+V KSTVPV   + I++ L  N+      I+ +PEFL EG A+ D  +P R++IG       + AV   +      +P   +L T+   AE  KL +N +LA R++  N + +  E+ G N   +   V  D +IG  + N   G
Sbjct:   28 EVVAFDTHQKKVDLLNDKLSPIEDKEIENYLST---KILNFRATTNKYEAYKNANYVIIATPTNYDP--GSNYFDTSSVEAVIRDVTEINPN-AIMVVKSTVPVGFTKTIKEHLGINN------IIFSPEFLREGRALYDNLHPSRIIIGECSERAERLAVLFQEGAIKQNIP---VLFTDSTEAEAIKLFSNTYLAMRVAFFNELDSYAESFGLNTRQIIDGVCLDPRIGNYYNNPSFG 252          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_SHIFL (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigella flexneri GN=wecC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 70/228 (30.70%), Postives = 101/228 (44.30%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            +V  VDI+   ++  N   + I EP L  VVK    G  L  ST       EAD   +++ TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F          +I   PE +  G  + +L   DRV+  G  TP        L  ++     E + + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:   28 QVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTP----VEADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASELYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_ECOLI (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli (strain K12) GN=wecC PE=3 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 70/228 (30.70%), Postives = 101/228 (44.30%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            +V  VDI+   ++  N   + I EP L  VVK    G  L  ST       EAD   +++ TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F          +I   PE +  G  + +L   DRV+  G  TP        L  ++     E + + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:   28 QVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTP----VEADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASELYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_ECO57 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli O157:H7 GN=wecC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 70/228 (30.70%), Postives = 101/228 (44.30%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            +V  VDI+   ++  N   + I EP L  VVK    G  L  ST       EAD   +++ TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F          +I   PE +  G  + +L   DRV+  G  TP        L  ++     E + + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:   28 QVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTP----VEADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASELYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_METVS (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=wecC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 64/218 (29.36%), Postives = 103/218 (47.25%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQC-RGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            EV  VDIS  R+N   +    I EPGL  ++K     KNL   T  +K    AD   + + TP      G+ +  DL+Y   A   I        ++V +ST+P +T + I  I+       K ++   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV
Sbjct:   34 EVIGVDISEKRVNEIKNGDFKIEEPGLLTLLKGAINSKNLNVKTKAEK----ADAFIICVPTPAIGCDDGS-KKCDLSYVLDAVNSILPYIDEGNLIVIESTIPPETTQKIYDIIDK-----KVYVAHCPERVLPGKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNV 235          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_YERPE (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersinia pestis GN=wecC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 66/228 (28.95%), Postives = 100/228 (43.86%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVK-QCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            +V  VD++   +   N   + I EP LD VVK    G  L   T        AD   +++ TP K          D+ + ESAA+ IA V K   +V+ +ST PV   E + + L      + F          +I   PE +  G  + +L   DRV+  G  TP+      AL  ++     E + + TN  +AE+ KL  N+F    I+  N +S +C+  G NV
Sbjct:   28 KVIGVDVNAHAVETINRGAIHIVEPDLDKVVKIAVEGGYLQAVTKPQA----ADAFLIAVPTPFK-----GDHEPDMIFVESAAKSIAPVLKKGDLVILESTSPVGATEQMAQWLAEARPDLSFPQQAGEAADINIAYCPERVLPGQVMVELIQNDRVI--GGMTPKCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICDEQGINV 240          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_SALTI (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhi GN=wecC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 65/227 (28.63%), Postives = 97/227 (42.73%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            +V  VDI+   ++  N   + I EP L  VVK         +T       EAD   +++ TP K          D+ Y E+AA+ IA V K   +V+ +ST PV   E +   L      + F          +I   PE +  G  + +L   DRV+  G  TP       AL  ++     E + + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:   28 QVIGVDINQHAVDTINRGEIHIVEPALGNVVKMAVEGGFLRATTTP---VEADAYLIAVPTPFK-----GDHDPDMAYVEAAAKSIAPVLKKGALVILESTSPVGATEQMAGWLAGMRPDLTFPQQAGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAEQGINV 240          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: WECC_SALTY (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhimurium GN=wecC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 65/227 (28.63%), Postives = 97/227 (42.73%), Query Frame = 2
Query:   20 EVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------HILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 670
            +V  VDI+   ++  N   + I EP L  VVK         +T       EAD   +++ TP K          D+ Y E+AA+ IA V K   +V+ +ST PV   E +   L      + F          +I   PE +  G  + +L   DRV+  G  TP       AL  ++     E + + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:   28 QVIGVDINQHAVDIINRGEIHIVEPALGNVVKMAVEGGFLRATTTP---VEADAYLIAVPTPFK-----GDHDPDMAYVEAAAKSIAPVLKKGALVILESTSPVGATEQMAGWLAGMRTDLTFPQQAGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAEQGINV 240          
The following BLAST results are available for this feature:
BLAST of FC929824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
UDG5_ECOLX1.525e-1327.08UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]
WECC_SHIFL5.795e-1330.70UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigel... [more]
WECC_ECOLI5.795e-1330.70UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]
WECC_ECO575.795e-1330.70UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]
WECC_METVS1.686e-1229.36UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_YERPE2.876e-1228.95UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersin... [more]
WECC_SALTI2.876e-1228.63UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmon... [more]
WECC_SALTY3.756e-1228.63UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929824 ID=FC929824; Name=FC929824; organism=Citrus clementina; type=EST; length=740bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCATCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGATAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAATCAATA
CCCCAACCAAAACTCAAGGTCTCGGTGCTGGCGAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAAGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCACATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAAGATGTGTATGCACACTGGGTCCCAGAATACCAAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCACGTGGCATTTGCTGTTGGTACAGAC
TCTAAGATTGGGCCCAAATTCTTGAATGCTATTGTTGGGT
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