FC929845

Overview
NameFC929845
Unique NameFC929845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15054 contig Ccv1_Contig15054:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: KLDC2_BOVIN (Kelch domain-containing protein 2 OS=Bos taurus GN=KLHDC2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 48/180 (26.67%), Postives = 81/180 (45.00%), Query Frame = 1
Query:  118 WIKLDQKGSGPGARSSHAITIVGQKVYAFGGE-FTPRVPV--------------------DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHS-TAADDRHVYIFGGCGVSGR-LNDLWGFDVVDRKWIQY 588
            W ++D +G  P ++    + +   K+  FGG  + P   V                    ++++H+ D ET  WS    TG  P PR     A VG+  ++FGGR      +N+L+  +  T +W  L      P  RS+HS T     H+++FGG     + L+D W + +   +WI++
Sbjct:  132 WERIDCQGVPPSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFIWSQPITTGKPPSPRAAHACATVGNKGFVFGGR-YRDARMNDLHYLNLDTWEWNELIPQGICPVGRSWHSLTPVSSDHLFLFGGFTTDKQPLSDAWTYCISKNEWIKF 310          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: KLDC1_MOUSE (Kelch domain-containing protein 1 OS=Mus musculus GN=Klhdc1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  238 NNLHVFDLETLTWSVADVTGDVPP-PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWT--LLSNGDAGPPHRSYHS-TAADDRHVYIFGGCGVSG-RLNDLWGFDVVDRKWIQ 585
            N++HVFD +T TWS  ++ G VPP PR   + A +G+  Y+FGGR      +N+L+  +  T  W+  +  NG++ P HRS+H+ TA  D  +++FGG       L+D W  ++    W Q
Sbjct:  171 NDVHVFDTKTRTWSQPEIKGGVPPQPRAAHSCAVLGNKGYVFGGR-VLQTRMNDLHYLNLDTWVWSGRISVNGES-PKHRSWHTLTAITDDKLFLFGGLNADNIPLSDGWIHNITTNCWKQ 289          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 1
Query:  250 VFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAAD-DRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYG 669
            VFDL   +WS+    G  P  R G ++  VG ++ +FGG+D     LN+L+  D  T  W  +    + P  RS H+ A   +R++ IFGG   +   +DL   D+   +W ++   G+    R G    VT G+ W + G
Sbjct:  275 VFDLHCCSWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHA-GVTIGENWYIVG 414          

HSP 2 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 1
Query:  115 TWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAA-VGHTIYMFGGRDGTHKE-LNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGG 519
            +W  L   G  P +R   ++T+VG+ +  FGG+   R  + N+LH+ DL+T+TW   D  G  P PR     A      + +FGG  G+H    ++L+  D +T +W+  +     P  R+ H+      + YI GG
Sbjct:  282 SWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLL-NDLHILDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGG--GSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGENWYIVGG 415          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: DYHA_CHLRE (Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA11 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 36/111 (32.43%), Postives = 55/111 (49.55%), Query Frame = 1
Query:  265 TLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGG---RDGTHKELNELYSFDTRTN---QWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 579
            ++ W V +  G+ P PR G +   +G    +FGG   +DG     N+LY  DT      +W  L   +A PP   + + A DD+ + +FGG     R ND+W F+  D+ W
Sbjct:    2 SIFWEVPNAQGEAPCPRSGHSFTVLGERFVLFGGCGRKDGKAAAFNDLYELDTSDPDEYKWKELVVANAPPPRARHAAIALDDKRLLVFGGLNKRIRYNDVWLFNYDDKSW 112          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: TAG53_CAEEL (Putative protein tag-53 OS=Caenorhabditis elegans GN=tag-53 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1
Query:   97 MASAKGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGG-------RDGTHKELNELYSFDTRTNQW 429
            M  +   W  +    + P  ++SHA   +   V++ GGEF       NN+ V+++ +  WS  +V+GD+P PR   T+    + +YMFGG          T    NEL+ FD  + +W
Sbjct:  271 MPVSSSVWDLIHPTNNAPTGKASHASIAIDDVVWSIGGEFFDGSSDPNNIDVYNVTSRIWSKVEVSGDMPKPRFDHTVVKYKNKLYMFGGVTKTQVRHQTTQAATNELWIFDMGSKKW 388          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: Y9963_DICDI (Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  145 GPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVF---DLETLTWSVADVTGD-VPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSN--GDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLND 546
            GP +  +H    +G K Y FGG    ++   N L+V    D  T+ WS   ++G  +P PR G T    G+   +FGG DG  + LN+LY  +  T  W+ ++N  G   P  R  H++      + IFGG G++   N+
Sbjct:  701 GPESIYNHDYCRIGNKFYLFGGYVAGKL--SNKLYVLTIMDDSTVHWSSPRISGGCIPSPRYGHTFTRYGNRFLLFGGYDG-EQCLNDLYILEPETMCWSTVTNIKGGQTPSERFGHTSTILGEKLIIFGGKGINNNNNN 837          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: KEL1_YEAST (Kelch repeat-containing protein 1 OS=Saccharomyces cerevisiae GN=KEL1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 58/208 (27.88%), Postives = 93/208 (44.71%), Query Frame = 1
Query:  139 GSGPGARSSHAITIVGQ-----KVYAFGGEFTPRVPVDNNLHVFDLETLT-----WSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGV-SGRLNDLWGFDVVDRKWIQYP--SAGENCKGRGGPGL-IVTQGKIWVVYG----FAGVEVDDVHCFD 708
            G  P  R  H I+I+       K+Y FGG+F       N+L V+DL +       W         PPP    TM +    +++FGG D     +N+++ +D   N W ++      PP    H+T   +  + + GG       LN ++  ++  RKW + P  +AG   +GR G  L ++   KI ++ G    +A VE  D+H  D
Sbjct:  231 GPRPLGRYGHKISIIATTQMKTKLYVFGGQFDDTY--FNDLAVYDLSSFRRPDSHWEFLKPRTFTPPPITNFTMISYDSKLWVFGG-DTLQGLVNDVFMYDPAINDWFIIDTTGEKPPPVQEHATVVYNDLMCVVGGKDEHDAYLNSVYFLNLKSRKWFKLPVFTAGIP-QGRSGHSLTLLKNDKILIMGGDKFDYARVEEYDLHTSD 434          
The following BLAST results are available for this feature:
BLAST of FC929845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
KLDC2_BOVIN2.724e-1226.67Kelch domain-containing protein 2 OS=Bos taurus GN... [more]
KLDC1_MOUSE3.557e-1236.36Kelch domain-containing protein 1 OS=Mus musculus ... [more]
ACBP5_ARATH4.646e-1231.21Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
DYHA_CHLRE1.035e-1132.43Dynein alpha chain, flagellar outer arm OS=Chlamyd... [more]
TAG53_CAEEL5.136e-1129.66Putative protein tag-53 OS=Caenorhabditis elegans ... [more]
Y9963_DICDI6.708e-1132.14Probable serine/threonine-protein kinase DDB_G0272... [more]
KEL1_YEAST6.708e-1127.88Kelch repeat-containing protein 1 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC34001A09EF PostHarvC1 Citrus clementina cDNA clone C34001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929845 ID=FC929845; Name=FC929845; organism=Citrus clementina; type=EST; length=717bp
GGAGAGCCAGAAGAAAGAAATCAGGCTGCAGAGTGGAGACTGGAGAGTAA
CTCTTGGGTCTTGGCCATTCTCCCCTATCCTTTTCCCAAGTCATAAATGG
CTTCTGCCAAAGGCACATGGATCAAGCTTGACCAAAAGGGTTCCGGGCCT
GGAGCCAGAAGCTCGCATGCAATTACCATAGTAGGACAAAAGGTCTATGC
TTTCGGGGGCGAGTTCACACCACGTGTCCCGGTTGACAACAACCTCCATG
TCTTCGACCTCGAAACCCTAACATGGTCTGTGGCCGATGTTACTGGGGAC
GTCCCTCCGCCACGCGTCGGTGTCACAATGGCTGCGGTTGGACATACCAT
CTATATGTTTGGTGGTCGGGATGGTACACACAAGGAGCTCAATGAGCTGT
ACTCTTTTGACACGCGTACAAACCAGTGGACCCTATTATCTAACGGTGAT
GCTGGCCCCCCTCATAGGAGCTACCACTCAACGGCCGCTGATGATCGACA
CGTGTACATCTTCGGCGGTTGTGGTGTTTCAGGCCGGCTTAATGATCTAT
GGGGTTTTGATGTTGTTGATAGAAAATGGATCCAATATCCATCGGCAGGG
GAGAACTGCAAGGGTAGAGGTGGGCCCGGGTTGATAGTGACCCAGGGGAA
GATATGGGTTGTGTATGGTTTTGCTGGAGTGGAAGTGGATGATGTGCATT
GCTTTGATCCAGCCCAT
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