FC929852

Overview
NameFC929852
Unique NameFC929852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_SCHPO (Thioredoxin reductase OS=Schizosaccharomyces pombe GN=trr1 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.141e-54
Identity = 107/175 (61.14%), Postives = 127/175 (72.57%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVF----TDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            KV IIGSGP            ELKP+++EG +AN IA GGQLTTT+DVENFPGFP GI G  L +  R QSLRFGT+I TETVSK+D  SRPFK +     + +   AD+VI+ATGA A++L   G D +W  GISACAVCDGA PI+R+KPLAV+GGGDSA EE+ FLTKYGSK
Sbjct:    5 KVVIIGSGPAGHTAAIYLARGELKPVMYEGMLANGIAAGGQLTTTTDVENFPGFPDGINGTTLTENFRAQSLRFGTEIITETVSKLDLSSRPFKYWLEGAEEEEPHTADSVILATGASARRLHITGEDTYWQAGISACAVCDGAVPIYRNKPLAVVGGGDSAAEEAQFLTKYGSK 179          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_NEUCR (Thioredoxin reductase OS=Neurospora crassa GN=cys-9 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.652e-54
Identity = 104/176 (59.09%), Postives = 131/176 (74.43%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD---SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGS 681
            + +KV IIGSGP            ELKP+L+EG+MAN IA GGQLTTT+++ENFPGFP GI+G +LMD+ + QS RFGTQI +ETV+KVD  +RPFK  T+    +   AD++I+ATGA A++L  PG + +W  GISACAVCDGA PIFR+K L VIGGGDSA EE+ +LTKYGS
Sbjct:    1 MHSKVVIIGSGPAAHTAAIYLARAELKPVLYEGFMANGIAAGGQLTTTTEIENFPGFPDGIMGQELMDKMKAQSERFGTQIISETVAKVDLSARPFKYATEWSPEEYHTADSIILATGASARRLHLPGEEKYWQNGISACAVCDGAVPIFRNKHLVVIGGGDSAAEEAMYLTKYGS 176          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_PENCH (Thioredoxin reductase OS=Penicillium chrysogenum GN=TRR1 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 4.037e-53
Identity = 107/178 (60.11%), Postives = 128/178 (71.91%), Query Frame = 1
Query:  169 TKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD------SKSV-LADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGS 681
            +KV IIGSG             EL+P+L+EG +AN  A GGQLTTT+DVENFPGFP GI G +LMD  R QS RFGT+I TET+SK+D  SRPFK++T+      S+ V  AD VI+ATGA A++L  PG + +W  GISACAVCDGA PIFR+KPL VIGGGDSA EE+ FL KYGS
Sbjct:    4 SKVVIIGSGAGAHTAAIYLSRAELQPVLYEGMLANGTAAGGQLTTTTDVENFPGFPSGIGGAELMDNMRAQSERFGTEIITETISKLDLSSRPFKMWTEWNDDEGSEPVRTADAVIIATGANARRLNLPGEETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKYGS 181          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_PNEJI (Thioredoxin reductase OS=Pneumocystis jiroveci GN=TRR1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.273e-53
Identity = 103/177 (58.19%), Postives = 129/177 (72.88%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKS---VLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + +KV IIGSGP            ELKP+L+EG +AN IA GGQLTTT+DVEN+PGFP GI+G  LM++ R QS+++GT I TETVSK+D   RPFK + +S       AD V++ATGA A++L  PG + +W RGISACAVCDGAAPIFR K L+V+GGGDSA EES FLT+Y +K
Sbjct:    1 MHSKVIIIGSGPAGHTAAIYLARAELKPVLYEGMLANGIAAGGQLTTTTDVENYPGFPDGIMGPLLMEKFREQSVKYGTCIITETVSKLDLSKRPFKYWCESDENTCHTADVVVMATGAYARRLHIPGEETYWQRGISACAVCDGAAPIFRGKCLSVVGGGDSAAEESLFLTRYATK 177          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_DICDI (Thioredoxin reductase OS=Dictyostelium discoideum GN=trrA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.029e-48
Identity = 91/174 (52.30%), Postives = 124/174 (71.26%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT---DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            KV IIGSGP             L+P++FEG+MA  +A GGQLTTT+++ENFPGFP  I G +LMD+ R Q+++ GT I T+T+SKVD K RPF ++    + K + A ++I+ATGA AK++  PG   FW++G+SACAVCDGA PI+R+K L V+GGGD+A EE+ FLT + SK
Sbjct:    8 KVVIIGSGPAGHTAGIYAGRARLEPLMFEGFMAGGVAAGGQLTTTTEIENFPGFPIDISGSELMDKMREQNIKCGTTIETKTISKVDLKQRPFTIYVEDEEDKPIKAQSIIIATGATAKRMGVPGETEFWSKGVSACAVCDGALPIYRNKHLVVVGGGDTAAEEATFLTHFASK 181          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_CHLTR (Thioredoxin reductase OS=Chlamydia trachomatis GN=trxB PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.285e-45
Identity = 88/173 (50.87%), Postives = 120/173 (69.36%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS--DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            K+ IIGSGP             L P+LFEG+ +     GGQL TT++VENFPGFP+G+LG  LMD  + Q+ RFGTQ+ ++ ++ VDF  RPF + +  ++   D  I+ATGA AK+L  PG+  + FW +G++ACAVCDGA+PIFRDK L V+GGGDSA+EE+ FLT+YG +
Sbjct:    5 KLVIIGSGPAGYTAAIYASRALLTPVLFEGFFSG--IAGGQLMTTTEVENFPGFPEGVLGHQLMDLMKTQAQRFGTQVLSKDITAVDFSVRPFVLKSGKETFTCDACIIATGASAKRLSIPGAGDNEFWQKGVTACAVCDGASPIFRDKDLFVVGGGDSALEEAMFLTRYGKR 175          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_CHLMU (Thioredoxin reductase OS=Chlamydia muridarum GN=trxB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 89/173 (51.45%), Postives = 118/173 (68.21%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS--DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            K+ IIGSGP             L PILFEG+ +     GGQL TT++VENFPGFPQG+LG  LM+  + Q+ RFGTQ+  + ++ VDF  RPF + +   +   D  I+ATGA AK+L  PG+  + FW +G++ACAVCDGA+PIFRD+ L VIGGGDSA+EE+ FLT+YG +
Sbjct:    5 KLAIIGSGPAGYTAAIYASRALLTPILFEGFFSG--IAGGQLMTTTEVENFPGFPQGVLGHQLMENMKMQAQRFGTQVIAKDITSVDFSVRPFVLKSGEDTFTCDACIIATGASAKRLSIPGAGDNEFWQKGVTACAVCDGASPIFRDRDLFVIGGGDSALEEAMFLTRYGKR 175          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_CHLPN (Thioredoxin reductase OS=Chlamydia pneumoniae GN=trxB PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.788e-43
Identity = 86/175 (49.14%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP--GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGS 681
            + +++ IIGSGP             L P+LFEG+ +     GGQL TT++VENFPGFP+GILG  LM+  + Q++RFGT+   + +  VDF  RPF + +  ++   D  I+ATGA AK+L+ P  G+D FW +G++ACAVCDGA+PIF++K L VIGGGDSA+EE+ +LT+YGS
Sbjct:    2 IHSRLIIIGSGPSGYTAAIYASRALLHPLLFEGFFSG--ISGGQLMTTTEVENFPGFPEGILGPKLMNNMKEQAVRFGTKTLAQDIISVDFSVRPFILKSKEETYSCDACIIATGASAKRLEIPGAGNDEFWQKGVTACAVCDGASPIFKNKDLYVIGGGDSALEEALYLTRYGS 174          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_RICBR (Thioredoxin reductase OS=Rickettsia bellii (strain RML369-C) GN=trxB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 78/175 (44.57%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + TKV IIGSGP             L PIL  G     I PGGQLT T+DVEN+PGF + + G  LM++ R Q+   GT+I  + V KVD   RPFKV T S++   A+++I+ TGA A+ L  P    F   G+SACA CDG    F+++ + V+GGG+SA+EE+ +LT + SK
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYAARASLNPILING-----IQPGGQLTITTDVENYPGFAESVQGPWLMEQMRMQAENVGTKIVNDYVEKVDLSQRPFKVSTGSRTEYEAESIIICTGAEARWLGIPTEQEFMGFGVSACATCDGF--FFKNQKVVVVGGGNSAVEEALYLTNHASK 170          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_RICFE (Thioredoxin reductase OS=Rickettsia felis GN=trxB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 77/175 (44.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + TKV IIGSGP             LKPIL  G     + PGGQLT T+DVEN+PGF + + G  LM++   Q+   GT+I ++ V KVD   RPFKVFT +     A+++I+ TGA AK L       F   G+SACA CDG    F+++ + V+GGG+SA+EE+ +LT + SK
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYTARAALKPILING-----MQPGGQLTITTDVENYPGFAETVQGPWLMEQMSMQAKNVGTEIISDYVEKVDLSKRPFKVFTGAGNEYEAESIIICTGAEAKWLSIASEQEFRGFGVSACATCDGF--FFKNQEIVVVGGGNSAVEEALYLTNHASK 170          
The following BLAST results are available for this feature:
BLAST of FC929852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXB_SCHPO2.141e-5461.14Thioredoxin reductase OS=Schizosaccharomyces pombe... [more]
TRXB_NEUCR3.652e-5459.09Thioredoxin reductase OS=Neurospora crassa GN=cys-... [more]
TRXB_PENCH4.037e-5360.11Thioredoxin reductase OS=Penicillium chrysogenum G... [more]
TRXB_PNEJI5.273e-5358.19Thioredoxin reductase OS=Pneumocystis jiroveci GN=... [more]
TRXB_DICDI1.029e-4852.30Thioredoxin reductase OS=Dictyostelium discoideum ... [more]
TRXB_CHLTR5.285e-4550.87Thioredoxin reductase OS=Chlamydia trachomatis GN=... [more]
TRXB_CHLMU1.177e-4451.45Thioredoxin reductase OS=Chlamydia muridarum GN=tr... [more]
TRXB_CHLPN3.788e-4349.14Thioredoxin reductase OS=Chlamydia pneumoniae GN=t... [more]
TRXB_RICBR1.034e-3244.57Thioredoxin reductase OS=Rickettsia bellii (strain... [more]
TRXB_RICFE3.008e-3244.00Thioredoxin reductase OS=Rickettsia felis GN=trxB ... [more]

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Properties
Property NameValue
Genbank descriptionC34001B04EF PostHarvC1 Citrus clementina cDNA clone C34001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929852 ID=FC929852; Name=FC929852; organism=Citrus clementina; type=EST; length=704bp
GATAGAAGCCCTAATGGTAATACTACTCTTAAGCTGAGATCACTGCTGAC
CAAAGCACGAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCG
CCGCTTCTTTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGAC
GAAATACAAACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGC
CGCCCACACTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTC
TCTTCGAGGGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACC
ACCACCTCCGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGG
GGGCGACTTGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCC
AGATTTTTACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTT
AAAGTTTTTACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGC
CACCGGCGCCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCT
GGAACCGTGGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATA
TTTCGGGACAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGA
AGAAAGCCACTTTTTGACAAAGTACGGATCAAAGTTTATATATTCATAGG
AGGG
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