FC929852

Overview
NameFC929852
Unique NameFC929852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_RICPR (Thioredoxin reductase OS=Rickettsia prowazekii GN=trxB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 74/175 (42.29%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + TKV IIGSGP             LKPIL  G     + PGGQLT T+DVEN+PGF + I G  LM++   Q+   GT+I ++ V +VD   RPFK+FT +     AD++I+ TGA +K L       F   G+S+CA+CDG    F+++ + V+GGG+SA+EE+ +LT + +K
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYTARSALKPILING-----MQPGGQLTMTTDVENYPGFAETIQGPWLMEQMSMQAKNVGTEIISDYVERVDLSKRPFKIFTGTGNEYEADSIIICTGAESKWLGIASEQEFRGFGVSSCAICDGF--FFKNQEIVVVGGGNSALEEALYLTNHANK 170          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_MYCTU (Thioredoxin reductase OS=Mycobacterium tuberculosis GN=trxB PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 79/169 (46.75%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK--VFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKY 675
            V +IGSGP            +L P++FEG      + GG L TT+DVEN+PGF  GI G +LMD  R Q+LRFG  +  E V  V     P K  V  D ++  A  VI+A GA A+ LQ PG      RG+S+CA CDG    FRD+ +AVIGGGDSAMEE+ FLT++
Sbjct:   17 VIVIGSGPAGYTAALYAARAQLAPLVFEG-----TSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMEDVESVSLHG-PLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGGDSAMEEATFLTRF 177          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_RICCN (Thioredoxin reductase OS=Rickettsia conorii GN=trxB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 76/175 (43.43%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + TKV IIGSGP             LKPIL  G     + PGGQLT T+DVEN+PGF + + G  LM++   Q+   GT+I ++ V KVD   RPFKVFT + +   A+++I+ TGA AK L       F   G+SACA CDG    F+++ + V+GGG+SA+EE+ +LT + +K
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYTARAALKPILING-----MQPGGQLTITTDVENYPGFAETVQGPWLMEQMYMQAKNVGTEIVSDYVEKVDLSKRPFKVFTGAGNEYDAESIIICTGAEAKWLGIASEQKFRGFGVSACATCDGF--FFKNQEIVVVGGGNSAVEEALYLTNHANK 170          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_RICTY (Thioredoxin reductase OS=Rickettsia typhi GN=trxB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + TKV IIGSGP             LKPIL  G     + PGGQLT T+DVEN+PGF + I G  LM++   Q+   GT+I  + V +VD   RPFK+FT +     AD++I+ TGA +K L       F   G+S+CA+CDG    F+++ + V+GGG+SA+EE+ +LT + +K
Sbjct:    3 ITTKVLIIGSGPAGLSAAIYTARSSLKPILING-----MQPGGQLTMTTDVENYPGFAKTIQGPWLMEQMSIQAKNVGTEIINDYVERVDLSKRPFKIFTGTGNKYEADSIIICTGAESKWLGITSEQEFRGFGVSSCAICDGF--FFKNQDIVVVGGGNSALEEALYLTNHANK 170          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_VIBCH (Thioredoxin reductase OS=Vibrio cholerae GN=trxB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 70/172 (40.70%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  169 TKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            +K+ I+GSGP             LKP+L  G     +  GGQLTTT++VEN+PG  +G+ G  LM+R +  + RF T+I  + ++ VD  SRPF++  DS+    D +I++TGA AK L     +AF  RG+SACA CDG    +R++ +AV+GGG++A+EE+ +L+   S+
Sbjct:    7 SKLLILGSGPAGYTAAVYAARANLKPVLVTG-----MQQGGQLTTTTEVENWPGDAEGLTGPALMERMKEHAERFDTEIVFDHINSVDLSSRPFRLTGDSQEYTCDALIISTGASAKYLGLESEEAFKGRGVSACATCDGF--FYRNQKVAVVGGGNTAVEEALYLSNIASE 171          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 76/170 (44.71%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK--VFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKY 675
            +V +IGSGP            +L P++FEG      + GG L TT++VEN+PGF  GI G +LMD  R Q+LRFG ++ TE V  V  +  P K  V  + ++  A  VI+A G   + LQ PG      RG+SACA CDG+   FR + +AVIGGGDSAMEE+ FLT++
Sbjct:   13 EVIVIGSGPAGYTAALYAARAQLTPLVFEG-----TSFGGALMTTTEVENYPGFRNGITGPELMDDMREQALRFGAELRTEDVESVSLRG-PIKSVVTAEGQTYQARAVILAMGTSVRYLQIPGEQELLGRGVSACATCDGS--FFRGQDIAVIGGGDSAMEEALFLTRF 174          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_ECOLI (Thioredoxin reductase OS=Escherichia coli (strain K12) GN=trxB PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 70/175 (40.00%), Postives = 108/175 (61.71%), Query Frame = 1
Query:  160 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P  + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+ L  P  +AF  RG+SACA CDG    +R++ +AVIGGG++A+EE+ +L+   S+
Sbjct:    4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASE 171          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_ECO57 (Thioredoxin reductase OS=Escherichia coli O157:H7 GN=trxB PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 70/175 (40.00%), Postives = 108/175 (61.71%), Query Frame = 1
Query:  160 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P  + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+ L  P  +AF  RG+SACA CDG    +R++ +AVIGGG++A+EE+ +L+   S+
Sbjct:    4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASE 171          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STRCO (Thioredoxin reductase OS=Streptomyces coelicolor GN=trxB PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 76/169 (44.97%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL--ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKY 675
            V IIGSGP             LKP++FEG     +  GG L  T++VENFPGF  GI+G +LMD  R Q+ RFG ++  + V  VD  S   K  TD+   +  A  VIV TG+  +KL  P  DA   RG+S CA CDG    F+D+ +AVIGGGD+AMEE+ FL+++
Sbjct:    7 VIIIGSGPAGYTAALYTARASLKPLVFEG----AVTAGGALMNTTEVENFPGFQDGIMGPELMDNMRAQAERFGAELIPDDVVAVDL-SGEIKTVTDTAGTVHRAKAVIVTTGSQHRKLGLPNEDALSGRGVSWCATCDGF--FFKDQDIAVIGGGDTAMEEATFLSRF 168          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STRCL (Thioredoxin reductase OS=Streptomyces clavuligerus GN=trxB PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 75/169 (44.38%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL--ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKY 675
            V IIGSGP             L+P++FEG     +  GG L  T+DVENFPGF  GI+G DLMD  R Q+ RFG ++  + V  VD  +   K  TDS   +  A  VIV TG+  +KL  P  DA   RG+S CA CDG    F+D+ + V+GGGD+AMEE+ FL+++
Sbjct:    7 VIIIGSGPAGYTAALYTARASLQPLVFEG----AVTAGGALMNTTDVENFPGFRDGIMGPDLMDNMRAQAERFGAELIPDDVVSVDL-TGDIKTVTDSAGTVHRAKAVIVTTGSQHRKLGLPREDALSGRGVSWCATCDGF--FFKDQDIVVVGGGDTAMEEATFLSRF 168          
The following BLAST results are available for this feature:
BLAST of FC929852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXB_RICPR1.493e-3142.29Thioredoxin reductase OS=Rickettsia prowazekii GN=... [more]
TRXB_MYCTU1.493e-3146.75Thioredoxin reductase OS=Mycobacterium tuberculosi... [more]
TRXB_RICCN1.950e-3143.43Thioredoxin reductase OS=Rickettsia conorii GN=trx... [more]
TRXB_RICTY2.547e-3142.29Thioredoxin reductase OS=Rickettsia typhi GN=trxB ... [more]
TRXB_VIBCH5.673e-3140.70Thioredoxin reductase OS=Vibrio cholerae GN=trxB P... [more]
TRXB_MYCLE9.677e-3144.71Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
TRXB_ECOLI9.677e-3140.00Thioredoxin reductase OS=Escherichia coli (strain ... [more]
TRXB_ECO579.677e-3140.00Thioredoxin reductase OS=Escherichia coli O157:H7 ... [more]
TRXB_STRCO1.651e-3044.97Thioredoxin reductase OS=Streptomyces coelicolor G... [more]
TRXB_STRCL3.677e-3044.38Thioredoxin reductase OS=Streptomyces clavuligerus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B04EF PostHarvC1 Citrus clementina cDNA clone C34001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929852 ID=FC929852; Name=FC929852; organism=Citrus clementina; type=EST; length=704bp
GATAGAAGCCCTAATGGTAATACTACTCTTAAGCTGAGATCACTGCTGAC
CAAAGCACGAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCG
CCGCTTCTTTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGAC
GAAATACAAACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGC
CGCCCACACTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTC
TCTTCGAGGGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACC
ACCACCTCCGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGG
GGGCGACTTGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCC
AGATTTTTACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTT
AAAGTTTTTACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGC
CACCGGCGCCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCT
GGAACCGTGGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATA
TTTCGGGACAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGA
AGAAAGCCACTTTTTGACAAAGTACGGATCAAAGTTTATATATTCATAGG
AGGG
back to top