FC929852

Overview
NameFC929852
Unique NameFC929852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_MYCSM (Thioredoxin reductase OS=Mycobacterium smegmatis GN=trxB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 73/167 (43.71%), Postives = 97/167 (58.08%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKY 675
            V IIGSGP            +LKP++FEG        GG L TT++VEN+PGF +GI G +LMD+ R Q+LRF   +  E V  V  +     V    ++  A  VI+A GA A+ L  PG +A    G+S CA CDG    FRD+ + V+GGGDSAMEE+ FLT++
Sbjct:   10 VIIIGSGPAGYTAAIYAARAQLKPLVFEGTQF-----GGALMTTTEVENYPGFREGITGPELMDQMREQALRFRADLRMEDVDAVQLEGPVKTVVVGDETHQARAVILAMGAAARHLGVPGEEALTGMGVSTCATCDGF--FFRDQDIVVVGGGDSAMEEATFLTRF 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_HAEIN (Thioredoxin reductase OS=Haemophilus influenzae GN=trxB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 68/170 (40.00%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGS 681
            K+ I+GSGP             LKP+L  G     +  GGQLTTT ++EN+PG  +   G  LM R    + +F T+I  + +++VD  SRPFK+F D ++   D +I+ATGA A+ +  P  + +  RG+SACA CDG    +R+KP+ VIGGG++A+EE+ +L    S
Sbjct:    8 KLLILGSGPAGYTAAIYAARANLKPVLVTG-----LQQGGQLTTTDEIENWPGDFEMTTGSGLMQRMLQHAEKFETEIVFDHINRVDLSSRPFKLFGDVQNFTCDALIIATGASARYIGLPSEENYKGRGVSACATCDGF--FYRNKPVGVIGGGNTAVEEALYLANIAS 170          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_BORBU (Thioredoxin reductase OS=Borrelia burgdorferi GN=trxB PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 70/171 (40.94%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ-FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V I+GSGP              K  + EG       PGGQLTTT++V N+PGF  GI G +LM   R Q +  G + F ETV  +  K   F ++T++    +  VI+A G+  KKL+    S  FWN+GIS CA+CDG   +F+ K +AVIGGG++A+ ES +L+K   K
Sbjct:   28 VIIVGSGPAGLTAGIYSVMSNYKAAILEG-----PEPGGQLTTTTEVYNYPGFKNGISGRNLMLNMREQVVNLGAKTFPETVFSIKRKGNIFYLYTENYIYKSKAVIIAVGSKPKKLETLKNSGLFWNKGISVCAICDG--HLFKGKRVAVIGGGNTALSESIYLSKLVDK 191          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_COXBU (Thioredoxin reductase OS=Coxiella burnetii GN=trxB PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGS 681
            I+GSGP             LKPI+  G     +  GGQL TT+DV+N+PG   G+ G  LM+R +  + R  TQ   + +++ D   RPF +  D+ +   D +I+ATGA A+ L  P   A+  +G+SACA CDG    +R K +AV+GGG++A+EE+ +L+   S
Sbjct:   11 ILGSGPAGYTAAIYAARANLKPIMITG-----MEQGGQLMTTTDVDNWPGEAPGLQGPQLMERMQKHAERLDTQFIFDHINEADLNQRPFLLKGDNATYSCDALIIATGASARYLGLPSEKAYMGKGVSACATCDGF--FYRGKKVAVVGGGNTAVEEALYLSHIAS 170          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_BUCAP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 64/171 (37.43%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            K+ I+GSGP             L P+L  G     I  GGQL  T+++EN+PG  + I G +LM+R    SL+F T+I  + +  V+FK +PF +  +      D VI+ATGA  + L     + F  +GIS CAVCDG    +++K +AV+GGG++A+EE+ +L+ +  K
Sbjct:    8 KIIILGSGPAGYTAAIYSSRANLNPLLITG-----INKGGQLMNTNEIENWPGDFKKITGPELMNRMHEHSLKFKTEIVYDNIISVEFKKKPFFLLGEYNKYTCDAVIIATGANPRYLGLSSENKFKGKGISTCAVCDGF--FYKNKEIAVVGGGNTAIEETLYLSNFVKK 171          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAES (Thioredoxin reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.599e-25
Identity = 69/170 (40.59%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIG+GP             LK ++ E  M     PGGQ+  T +VENFPGF   I G DL  +    + +FG +     +  V+ K     +   +K + A  VI++TGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 VAIIGAGPAGMTAAVYASRANLKTVMIERGM-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAEYQYGDIKSVEDKGDYKVINLGNKEITAHAVIISTGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAEQ (Thioredoxin reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.599e-25
Identity = 69/170 (40.59%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIG+GP             LK ++ E  M     PGGQ+  T +VENFPGF   I G DL  +    + +FG +     +  V+ K     +   +K + A  VI++TGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 VAIIGAGPAGMTAAVYASRANLKTVMIERGM-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAEYQYGDIKSVEDKGDYKVINLGNKEITAHAVIISTGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_BUCAI (Thioredoxin reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 63/180 (35.00%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  145 MDEIQTLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            MD+++   +K+ I+GSGP             L P L  G        GGQL  T+++EN+PG    I G +LM+R    ++   T++  +TV  V+FK  PF +  ++    AD+VI+ATGA  + L       F  +G+S CAVCDG    +++K +AV+GGG++A+EE+ +L+ +  K
Sbjct:    1 MDKVK--HSKIIILGSGPAGYTAAIYAARANLDPFLITG-----TNKGGQLMNTNEIENWPGDYNKISGSELMNRMYKHAIELKTKVICDTVISVNFKKNPFFLIGENNKYTADSVIIATGANPRYLGLQSESLFKGKGVSTCAVCDGF--FYKNKEVAVVGGGNTAIEETLYLSNFVKK 171          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAAW (Thioredoxin reductase OS=Staphylococcus aureus (strain MW2) GN=trxB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAAS (Thioredoxin reductase OS=Staphylococcus aureus (strain MSSA476) GN=trxB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
The following BLAST results are available for this feature:
BLAST of FC929852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXB_MYCSM4.803e-3043.71Thioredoxin reductase OS=Mycobacterium smegmatis G... [more]
TRXB_HAEIN1.397e-2940.00Thioredoxin reductase OS=Haemophilus influenzae GN... [more]
TRXB_BORBU2.231e-2740.94Thioredoxin reductase OS=Borrelia burgdorferi GN=t... [more]
TRXB_COXBU8.477e-2738.32Thioredoxin reductase OS=Coxiella burnetii GN=trxB... [more]
TRXB_BUCAP2.467e-2637.43Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_STAES1.599e-2540.59Thioredoxin reductase OS=Staphylococcus epidermidi... [more]
TRXB_STAEQ1.599e-2540.59Thioredoxin reductase OS=Staphylococcus epidermidi... [more]
TRXB_BUCAI4.652e-2535.00Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_STAAW1.036e-2440.00Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAS1.036e-2440.00Thioredoxin reductase OS=Staphylococcus aureus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B04EF PostHarvC1 Citrus clementina cDNA clone C34001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929852 ID=FC929852; Name=FC929852; organism=Citrus clementina; type=EST; length=704bp
GATAGAAGCCCTAATGGTAATACTACTCTTAAGCTGAGATCACTGCTGAC
CAAAGCACGAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCG
CCGCTTCTTTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGAC
GAAATACAAACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGC
CGCCCACACTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTC
TCTTCGAGGGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACC
ACCACCTCCGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGG
GGGCGACTTGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCC
AGATTTTTACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTT
AAAGTTTTTACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGC
CACCGGCGCCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCT
GGAACCGTGGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATA
TTTCGGGACAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGA
AGAAAGCCACTTTTTGACAAAGTACGGATCAAAGTTTATATATTCATAGG
AGGG
back to top