FC929852

Overview
NameFC929852
Unique NameFC929852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAAR (Thioredoxin reductase OS=Staphylococcus aureus (strain MRSA252) GN=trxB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAAN (Thioredoxin reductase OS=Staphylococcus aureus (strain N315) GN=trxB PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAAM (Thioredoxin reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxB PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_STAAC (Thioredoxin reductase OS=Staphylococcus aureus (strain COL) GN=trxB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIG+GP             LK ++ E  +     PGGQ+  T +VENFPGF   I G DL  +    + +FG       +  V+ K     +   +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDSA+EE  FLTK+  K
Sbjct:    8 IAIIGAGPAGMTAAVYASRANLKTVMIERGI-----PGGQMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_SPIBA (Thioredoxin reductase (Fragment) OS=Spironucleus barkhanus GN=TRXB PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            I+G GP             L P++F G     I    QL TT++VEN+PGF + I G DL+    +Q+   G Q+F E V+K+D  +RPFK+    +++ +  D +I ATG+ A++L   G   FW +G+SACAVCD  + + ++K   V+GGGD A EE+ +L+   SK
Sbjct:    3 IVGGGPGGLAAAIYAGRAGLTPVIFLG-----IETSSQLMTTTEVENYPGF-KTIQGPDLVQNQVDQAEHCGAQLFYEDVTKIDATARPFKITHGYENEIMTCDALIFATGSTAQRLDVIGEKQFWQKGVSACAVCD--SMMAKNKDTVVVGGGDVACEEASYLSNIASK 164          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_LISIN (Thioredoxin reductase OS=Listeria innocua GN=trxB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 67/171 (39.18%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIG+GP            +L  ++ E  +     PGGQ+  T++VEN+PGF   ILG DL D+  + + +FG +     + +V    + FK  T  SK+  A  +I+ATGA  +KL   G +    RG+S CAVCDGA   F+++ L V+GGGDSA+EE  +LT+Y  K
Sbjct:   10 VIIIGAGPAGMTAALYTSRADLDTLMIERGV-----PGGQMVNTAEVENYPGF-DSILGPDLSDKMLSGAKQFGAEYAYGDIKEV-IDGKEFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGA--FFKNRELVVVGGGDSAVEEGTYLTRYADK 171          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_LISMO (Thioredoxin reductase OS=Listeria monocytogenes GN=trxB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 67/171 (39.18%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIG+GP            +L  ++ E  +     PGGQ+  T++VEN+PGF   ILG DL D+  + + +FG +     + +V    + FK  T  SK+  A  +I+ATGA  +KL   G +    RG+S CAVCDGA   F+++ L V+GGGDSA+EE  +LT+Y  K
Sbjct:   10 VIIIGAGPAGMTAALYTSRADLDTLMIERGV-----PGGQMVNTAEVENYPGF-DSILGPDLSDKMLSGAKQFGAEYAYGDIKEV-VDGKEFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGA--FFKNRELIVVGGGDSAVEEGTYLTRYADK 171          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_BACSU (Thioredoxin reductase OS=Bacillus subtilis GN=trxB PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 67/171 (39.18%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVF-TDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIG+GP             L  ++ E  +     PGGQ+  T DVEN+PGF + ILG +L ++    + +FG +     + +V    + +KV    SK   A  VI+A GA  KK+  PG      RG+S CAVCDGA   F+ K L V+GGGDSA+EE  +LT++ SK
Sbjct:    9 VIIIGAGPAGMTAAVYTSRANLSTLMIERGI-----PGGQMANTEDVENYPGF-ESILGPELSNKMFEHAKKFGAEYAYGDIKEV-IDGKEYKVVKAGSKEYKARAVIIAAGAEYKKIGVPGEKELGGRGVSYCAVCDGA--FFKGKELVVVGGGDSAVEEGVYLTRFASK 170          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_BUCBP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 61/172 (35.47%), Postives = 99/172 (57.56%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKS-VLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            K+ I+GSGP             L+P+LF G   N+   GGQL  T+++EN+PG  + + G +LM+R  N +    T+I    + +V+F   PF + +D+     +D+VI+ATGA  K L       F  +G+S CAVCDG    ++++ +AV+GGG++A+EE+ +L+    K
Sbjct:   12 KLIILGSGPAGYTAAIYSARANLEPLLFTG---NN--KGGQLINTNEIENWPGDSKSLTGLELMERMHNHAKSLNTKIIPNEIIRVNFFKIPFLLVSDTNQYYTSDSVIIATGASPKYLGLTSESKFIGKGVSVCAVCDGF--FYKNEDVAVVGGGNTALEEALYLSNIARK 176          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_HELPY (Thioredoxin reductase OS=Helicobacter pylori GN=trxB PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 61/170 (35.88%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            IIG GP             +K  +LFE  M     PGGQ+T +S++EN+PG  + + G D M   + Q  RFG +     V +V  K   F +   D K+  A +VI+ATG   K+    G   +W +G+S CA CDG    +++K +AV+GGGD+A+EE+ +L     K
Sbjct:    6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKK 168          
The following BLAST results are available for this feature:
BLAST of FC929852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXB_STAAR1.036e-2440.00Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAN1.036e-2440.00Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAM1.036e-2440.00Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAC1.036e-2440.00Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_SPIBA1.036e-2438.24Thioredoxin reductase (Fragment) OS=Spironucleus b... [more]
TRXB_LISIN3.938e-2439.18Thioredoxin reductase OS=Listeria innocua GN=trxB ... [more]
TRXB_LISMO6.717e-2439.18Thioredoxin reductase OS=Listeria monocytogenes GN... [more]
TRXB_BACSU1.496e-2339.18Thioredoxin reductase OS=Bacillus subtilis GN=trxB... [more]
TRXB_BUCBP3.334e-2335.47Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_HELPY8.211e-2235.88Thioredoxin reductase OS=Helicobacter pylori GN=tr... [more]

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Properties
Property NameValue
Genbank descriptionC34001B04EF PostHarvC1 Citrus clementina cDNA clone C34001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929852 ID=FC929852; Name=FC929852; organism=Citrus clementina; type=EST; length=704bp
GATAGAAGCCCTAATGGTAATACTACTCTTAAGCTGAGATCACTGCTGAC
CAAAGCACGAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCG
CCGCTTCTTTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGAC
GAAATACAAACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGC
CGCCCACACTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTC
TCTTCGAGGGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACC
ACCACCTCCGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGG
GGGCGACTTGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCC
AGATTTTTACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTT
AAAGTTTTTACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGC
CACCGGCGCCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCT
GGAACCGTGGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATA
TTTCGGGACAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGA
AGAAAGCCACTTTTTGACAAAGTACGGATCAAAGTTTATATATTCATAGG
AGGG
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