FC929852

Overview
NameFC929852
Unique NameFC929852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_HELPJ (Thioredoxin reductase OS=Helicobacter pylori J99 GN=trxB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 60/170 (35.29%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            IIG GP             +K  +LFE  M     PGGQ+T +S++EN+PG  + + G D M   + Q  RFG +     + +V  K   F +   D K+  A +VI+ATG   K+    G   +W +G+S CA CDG    +++K +AV+GGGD+A+EE+ +L     K
Sbjct:    6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAIQRVSKKGSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKK 168          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_AQUAE (Thioredoxin reductase OS=Aquifex aeolicus GN=trxB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSKFIY 693
            V IIG+GP              K ++     A+     G L  T  +EN+PG P  + G +L+   R Q+  FG +     V   D  S P KV+T D +     T+IVA+GA+ +  +F G + F  RG+S C VCD A   F+D+P+AVIG  D A+EE+ F+ ++ +K  +
Sbjct:   15 VIIIGAGPAGTTAAIYTARAGWKTLVLYRAEAD-----GALGVTQKIENYPGVPGPLSGYELLKIMREQAKSFGAEFVRGKVIATDLNSDPKKVYTIDGREFRGKTIIVASGAMERANKFKGEEEFLGRGVSYCGVCDAA--FFKDQPVAVIGDDDYAIEEAEFIARFANKVFF 181          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_TREPA (Thioredoxin reductase OS=Treponema pallidum GN=trxB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTK 672
            V I+G+G              L+ ++ E       A GGQ      +EN+PG+   I G +  +  + Q++ FG QI  E V+ +  +   F + T + +  A +VI+ATGA  +K+  PG   F  RG+S CA CDG  P FR+K + VIGGGD+A +ES  L++
Sbjct:    7 VIIVGAGAAGLSAAQYACRANLRTLVIESK-----AHGGQALLIDSLENYPGYATPISGFEYAENMKKQAVAFGAQIAYEEVTTIGKRDSVFHITTGTGAYTAMSVILATGAEHRKMGIPGESEFLGRGVSYCATCDG--PFFRNKHVVVIGGGDAACDESLVLSR 165          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_CLOLI (Thioredoxin reductase OS=Clostridium litorale GN=trxB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 64/171 (37.43%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIGSGP            ++K +L EG        GGQ+  T +V N+PG      G  L+ R   Q   FG +   + +  VDF  +  KV   +K    A  VIVATGA  K    PG      +G+S CA CD  A  F D  + VIGGGD+A+EE+ FLTK+  K
Sbjct:    7 IAIIGSGPAGLAAALYGARAKMKTLLLEGMKV-----GGQIVITHEVANYPGSVPEATGPSLIGRMEEQVEEFGAERVMDNIVDVDFTDK-IKVLKGAKGEYKAKAVIVATGASPKLAGCPGEKELTGKGVSYCATCD--ADFFEDMEVFVIGGGDTAVEEAMFLTKFARK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_EUBAC (Thioredoxin reductase OS=Eubacterium acidaminophilum GN=trxB PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 55/170 (32.35%), Postives = 84/170 (49.41%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + IIGSGP            ++K I+ EG        GGQ+  T +V N+PG  +   G  L++R   Q+  FG +   + +  VD   +   +  +     A +VI+ATGA  +    PG      +G+S CA CD  A  F D  + V+GGGD+A+EE+ +L K+  K
Sbjct:    7 LAIIGSGPAGLAAALYGARAKMKTIMIEGQKV-----GGQIVITHEVANYPGSVREATGPSLIERMEEQANEFGAEKVMDKIVDVDLDGKIKVIKGEKAEYKAKSVILATGAAPRLAGCPGEQELTGKGVSYCATCD--ADFFEDMEVFVVGGGDTAVEEAMYLAKFARK 169          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_MYCPN (Thioredoxin reductase OS=Mycoplasma pneumoniae GN=trxB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFL 666
            V I+G+GP             L   + EG       PGG++  T+ VEN+PG+ + I G DL     N  +      F   + K+D  +  F ++ D K+V+ A TVI ATG + +KL     D F+ +GIS CA+CDG+  +++D+ + V+GGG+SA++E+ +L
Sbjct:   18 VAIVGAGPAGIAAGIYGKRANLNLAIIEG-----STPGGKVVKTNIVENYPGY-KSITGPDLGLEMYNHLIDLEPTFFYANLIKLDKAADTFILYLDDKTVVFAKTVIYATGMLERKLGVAKEDHFYGKGISYCAICDGS--LYKDQVVGVVGGGNSAIQEALYL 174          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_MYCGE (Thioredoxin reductase OS=Mycoplasma genitalium GN=trxB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 57/164 (34.76%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKS-VLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLT 669
            I+G+GP             L   + EG       PGG++  T+ VEN+PGF + I G +L     N  L F   +F   + K+D  +  F ++ D+K+ V + TVI ATG   +KL     D F+ +GIS CA+CD A  +++ K + V+GGG+SA++E+ +L+
Sbjct:   20 IVGAGPAGIASAIYGKRANLNLAIIEG-----NTPGGKIVKTNIVENYPGF-KTITGPELGLEMYNHLLAFEPVVFYNNLIKIDHLNDTFILYLDNKTTVFSKTVIYATGMEERKLGIEKEDYFYGKGISYCAICDAA--LYKGKTVGVVGGGNSAIQEAIYLS 175          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_UREPA (Thioredoxin reductase OS=Ureaplasma parvum GN=trxB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFL 666
            IIG+GP             L  I+ E        PGG++  TS+VEN+ G    I G +L  +   Q L     I  E   ++  K +  K+   +++++  TVI+ATG   ++L   G   F N+GIS CA+CDG  P++++K ++VIG G+SA+EE+ +L
Sbjct:   10 IIGAGPAGLAAAVYAKRSGLNVIIVEKQF-----PGGKIALTSNVENYLGI-NSIPGPELAYKMYEQVLNLNVSIIYEAADEISLKEKYKKIKLTTQTLITKTVIIATGTENRRLNILGELEFENKGISYCAICDG--PLYKNKAVSVIGSGNSAVEEAIYL 163          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_MYCPU (Thioredoxin reductase OS=Mycoplasma pulmonis GN=trxB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI-FTETVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVAKK-LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIG+GP             L  +  +     + APGG+L   S +EN+PG    + G DL  R    +  FG +  + + V  ++ K    + V  D K + A +VI+A+G V++K  +    D F NRG+S C +CDG  P++   P  +IGGG+SA+EE  FL+   SK
Sbjct:    9 VAIIGAGPGALTAAIYTSRGNLDTVFID-----NAAPGGKLIYASKIENWPG-DTIVKGTDLAIRFFEHAQAFGAKYEYGKVVDLINIKDDLKELVLEDGKKIQAKSVIIASGMVSRKPREILNYDEFENRGVSYCVICDG--PMYGHNPAIIIGGGNSAVEEGTFLSSIASK 173          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: R34K_CLOPA (34.2 kDa protein in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT-ETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKY 675
            IIG+GP            +L  ++ E  +      GGQ+  T  VENFPGF   I G DL D+    +   G  I     + K+        + T+        +I+ATGA +++L  P  +    + I  C +CDGA  +++ K L V+GGG+SA+E + FLTKY
Sbjct:   11 IIGAGPAGLTAAIYAIRAKLNTLVLENELV-----GGQIRETYTVENFPGF-NVISGADLADKMEEHAASIGVNIDQFSNIEKIKLSDDEKIIETEDVIYKVKALIIATGAKSRRLPIPEEEKLHGKVIHYCELCDGA--LYQGKDLVVVGGGNSAVEAAIFLTKY 168          
The following BLAST results are available for this feature:
BLAST of FC929852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXB_HELPJ1.072e-2135.29Thioredoxin reductase OS=Helicobacter pylori J99 G... [more]
TRXB_AQUAE5.322e-2134.48Thioredoxin reductase OS=Aquifex aeolicus GN=trxB ... [more]
TRXB_TREPA6.951e-2134.94Thioredoxin reductase OS=Treponema pallidum GN=trx... [more]
TRXB_CLOLI2.022e-2037.43Thioredoxin reductase OS=Clostridium litorale GN=t... [more]
TRXB_EUBAC3.814e-1932.35Thioredoxin reductase OS=Eubacterium acidaminophil... [more]
TRXB_MYCPN1.110e-1834.55Thioredoxin reductase OS=Mycoplasma pneumoniae GN=... [more]
TRXB_MYCGE1.449e-1834.76Thioredoxin reductase OS=Mycoplasma genitalium GN=... [more]
TRXB_UREPA5.508e-1833.95Thioredoxin reductase OS=Ureaplasma parvum GN=trxB... [more]
TRXB_MYCPU1.772e-1634.10Thioredoxin reductase OS=Mycoplasma pulmonis GN=tr... [more]
R34K_CLOPA6.733e-1632.5334.2 kDa protein in rubredoxin operon OS=Clostridi... [more]

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Properties
Property NameValue
Genbank descriptionC34001B04EF PostHarvC1 Citrus clementina cDNA clone C34001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929852 ID=FC929852; Name=FC929852; organism=Citrus clementina; type=EST; length=704bp
GATAGAAGCCCTAATGGTAATACTACTCTTAAGCTGAGATCACTGCTGAC
CAAAGCACGAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCG
CCGCTTCTTTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGAC
GAAATACAAACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGC
CGCCCACACTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTC
TCTTCGAGGGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACC
ACCACCTCCGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGG
GGGCGACTTGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCC
AGATTTTTACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTT
AAAGTTTTTACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGC
CACCGGCGCCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCT
GGAACCGTGGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATA
TTTCGGGACAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGA
AGAAAGCCACTTTTTGACAAAGTACGGATCAAAGTTTATATATTCATAGG
AGGG
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