FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHESW (Bifunctional protein folD OS=Shewanella sp. (strain W3-18-1) GN=folD PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.265e-50
Identity = 108/212 (50.94%), Postives = 138/212 (65.09%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGKA+AQ+IR++++E+V    E   +VPGLAV++VG    SQ YV  KRKAC EVG  S   DL    SE EL+S +  LN  P + GILVQLPLP HI + KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  AVVVG SNIVG P++L LL A  T T  H  T + E  +R+AD+V+ A G+
Sbjct:    3 AQIIDGKAIAQSIRTKLSEKVTARKEAGQRVPGLAVILVGADPASQVYVGSKRKACEEVGFISRSYDLETNCSEDELLSLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRQADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_RALEJ (Bifunctional protein folD OS=Ralstonia eutropha (strain JMP134) GN=folD PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.265e-50
Identity = 113/216 (52.31%), Postives = 146/216 (67.59%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +IDG A+A+ IRSE A     L+E+ G  PGLAVV+VG    SQ YV  K KAC + G  S     P  +SEAEL++++  LN  P +HGILVQLPLPKHI+  KVL  I+ EKDVDGFH  N G L M G  PLF PCTP GC+++L+     ++G RAVVVG SNIVG P+++LLL+A ATVTI +S T D  +  R+AD+++AA G+  +I
Sbjct:    3 AQLIDGNALAKQIRSEAAVRAARLTER-GHQPGLAVVLVGEDPASQVYVRNKVKACEDNGFHSSLDRYPADLSEAELLARIDALNNDPKIHGILVQLPLPKHIDSHKVLEAIAPEKDVDGFHVANAGAL-MTGA-PLFRPCTPYGCMKMLESISYPLRGARAVVVGASNIVGKPMAMLLLQAGATVTICNSKTRDIGAHTRDADVIVAAVGKRNLI 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_RALEH (Bifunctional protein folD OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=folD PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.265e-50
Identity = 113/216 (52.31%), Postives = 147/216 (68.06%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +IDG A+A+ IRSE A     L+E+ G  PGLAV++VG    SQ YV  K KAC + G  S     P  +SEAEL++++  LN  P++HGILVQLPLPKHI+  KVL  I+ EKDVDGFH  N G L M G  PLF PCTP GC+++L+     ++G RAVVVG SNIVG P+++LLL+A ATVTI +S T D  +  R+AD+V+AA G+  +I
Sbjct:    3 AQLIDGNALAKQIRSEAALRAARLTER-GHRPGLAVILVGEDPASQVYVRNKVKACQDNGFHSSLDRYPADLSEAELLARIEALNQDPNIHGILVQLPLPKHIDSHKVLEAIAPEKDVDGFHVANAGAL-MTGA-PLFRPCTPYGCMKMLESVQFPLRGARAVVVGASNIVGKPMAMLLLQAGATVTICNSKTRDIGAHTRDADVVVAAVGKRNLI 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_PHOPO (Bifunctional protein folD OS=Photobacterium phosphoreum GN=folD PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.265e-50
Identity = 106/216 (49.07%), Postives = 139/216 (64.35%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A IIDGK ++QT+R E+A  V+  ++   + PGLAVV+VG    SQ YV  KRKAC EVG  S   DLP   SE +L+  + ELN  P + GILVQLPLP  ++  ++L  I  EKDVDGFHP N+G+L+   R P    CTPKG + LL+R  + ++GK AV+VG SNIVG P++L LL A AT T  H  T D E  +R+ADI++ A G+   I
Sbjct:    3 AQIIDGKIISQTVRQEVAARVKARTDAGLRAPGLAVVLVGQDPASQIYVGSKRKACEEVGFISKSFDLPSSASEQQLLDLIDELNQDPTMDGILVQLPLPAGMDCTRILERIDPEKDVDGFHPYNVGRLSQ--RIPKLRSCTPKGIITLLERYNIEVRGKHAVIVGASNIVGRPMTLELLLAGATTTTCHRFTQDLEGHIRQADILVVAVGKPNFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD1_SILPO (Bifunctional protein folD 1/3 OS=Silicibacter pomeroyi GN=folD1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.265e-50
Identity = 108/216 (50.00%), Postives = 138/216 (63.89%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            AT+IDGKA A  IR ++AE V  L   +G  PGLAVV+VG    SQ YV  K K   EVG+ S++  L    SEA+L++ +  LN  PDVHGILVQLPLP H++E+ V+  I   KDVDGFH  N+G L    +    +PCTP GCL +L+    ++ G  AVV+GRSNIVG P++ LLL    TVTI HS T D   +VR ADIV+AA G+  M+
Sbjct:    3 ATVIDGKAFAARIRGQVAEHVAELKAGHGITPGLAVVLVGEDPASQVYVRSKGKQTVEVGMNSYEHKLDADTSEADLLALIDRLNGDPDVHGILVQLPLPGHLDEDLVINAIDPAKDVDGFHISNVGLLGTGQKS--MVPCTPLGCLMMLRDHHGSLSGMDAVVIGRSNIVGKPMAQLLLGDSCTVTIAHSRTKDLADVVRRADIVVAAVGRPEMV 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_WOLPM (Bifunctional protein folD OS=Wolbachia pipientis wMel GN=folD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.264e-50
Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            IIDGK +A  +   +++++ +L  +Y   P L V+++G    SQ YV  K+K    +GI S  I LP  + E ELI K++ELN  P VHGILVQLPLP HI+  +V+  +S+EKDVDGFH  N+GKL +KG     +PCTPKG L L+K     + GK AVV+GRSNIVG P+  LLL+ + TVTI+HS + D      +ADIV+AA G+   ++
Sbjct:    4 IIDGKKIANDLCERLSQKIDILKREYNIFPCLKVILIGSNPASQVYVRNKQKKAESIGISSETIVLPNNILEDELIEKINELNEDPSVHGILVQLPLPNHISASRVINTVSVEKDVDGFHDENVGKL-VKGEKNCLIPCTPKGSLHLIKSIEENLSGKNAVVIGRSNIVGKPMFYLLLQENCTVTILHSQSKDLAEYCSKADIVVAAVGKPNFVQ 217          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_RHOSK (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=folD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.264e-50
Identity = 109/213 (51.17%), Postives = 138/213 (64.79%), Query Frame = 3
Query:   75 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            IDGKA A  +R+ +AEEV  L E +G VPGLAVV+VG    SQ YV  K K   EVG+ SF+  LP   SEAEL++ +  LN  P VHGILVQLPLP H+N + V+  +   KDVDGFH  N+G+L    +    +PCTP GCL +L+    T+ G  AVVVGRSNIVG P++ LLL    TVT+ HS T D  ++ R ADI++AA G+  MI
Sbjct:    6 IDGKAFAAGVRARVAEEVARLKEGHGIVPGLAVVLVGEDPASQVYVGAKGKQTVEVGMTSFEHRLPAGTSEAELLALIDRLNHDPAVHGILVQLPLPAHLNADLVINALDPAKDVDGFHISNVGRLGTGQKS--MVPCTPLGCLMMLRDHLGTLSGLNAVVVGRSNIVGKPMAQLLLGESCTVTVAHSRTRDLAAVCRGADILVAAVGRPEMI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACWK (Bifunctional protein folD OS=Bacillus weihenstephanensis (strain KBAB4) GN=folD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.264e-50
Identity = 108/216 (50.00%), Postives = 147/216 (68.06%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A II G  VA+  R+++ E+V  L E+ G VPGLAV++VG    S+SYV  K K C +VGI S  I+LPE ++E  L+ ++  LN    ++GILVQLPLPKHI E+ ++  IS EKDVDGFHP+++G++ M G+D  FLPCTP G LEL+K + + I GK  VV+GRSNIVG PV  L L  +ATVT  HS T + + + + ADI+I A G+  M+
Sbjct:    3 AVIIKGNEVAEKKRAQLKEKVVKLKEQ-GIVPGLAVILVGEDPASRSYVKGKEKGCEQVGIYSELIELPETITEERLLVEIDRLNGDDRINGILVQLPLPKHIEEKAIIERISPEKDVDGFHPISVGRM-MTGQD-TFLPCTPHGILELVKETNLDISGKHVVVIGRSNIVGKPVGQLFLNENATVTYCHSKTRNIKELSKLADILIVAVGRPKMV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACLD (Bifunctional protein folD OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=folD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.264e-50
Identity = 112/218 (51.38%), Postives = 146/218 (66.97%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            ATIIDGK  A+  R ++A+EV  L +K G  PGLAV+++G    S SYV  K+KA   +GI+ F +D      +E EL+  + + N   D HGILVQLPLP HI+E+ V+  IS EKDVDGFHPLN+GK+ + G D  FLPCTP G +ELLK++ + + GK  VVVGRSNIVG PV  LLL  +ATVT  HS T D  +  ++ADI+I A G++  IK
Sbjct:    3 ATIIDGKETAKEKRGQLAKEVEEL-KKQGVTPGLAVILIGDDPASLSYVRGKKKAAEAMGIR-FQLDHFDASFTEQELLEVIDQYNQNDDFHGILVQLPLPDHISEQAVIERISPEKDVDGFHPLNVGKMLL-GEDT-FLPCTPAGIVELLKKTEIDLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTADITAHTKKADILIVAVGKANFIK 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SODGM (Bifunctional protein folD OS=Sodalis glossinidius (strain morsitans) GN=folD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 108/216 (50.00%), Postives = 141/216 (65.28%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A IIDG+AVAQ +RSE+A  ++   +   + PGLAVV+VGG   SQ YV+ KRKAC +VG  S   DLP  V+EA L++ + +LNA   V+GILVQLPLP  I+   VL  I+ +KDVDGFHP N+G+L    R PL  PCTP+G + LL+R  +   G  AVVVG SNIVG P+SL LL A  TVT+ H  T D    +  AD+++ A G++  I
Sbjct:    3 AKIIDGRAVAQQVRSEVAARIQARLKAGKRAPGLAVVLVGGDPASQIYVASKRKACEDVGFISLSYDLPNTVTEAALLALIDQLNADHRVNGILVQLPLPAGIDNISVLERIAPDKDVDGFHPYNVGRLCQ--RAPLLRPCTPRGIVTLLERYHIDTFGLNAVVVGASNIVGRPMSLELLLAGCTVTVTHRFTRDLRRHIENADLLVVAVGKASFI 216          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_SHESW3.265e-5050.94Bifunctional protein folD OS=Shewanella sp. (strai... [more]
FOLD_RALEJ3.265e-5052.31Bifunctional protein folD OS=Ralstonia eutropha (s... [more]
FOLD_RALEH3.265e-5052.31Bifunctional protein folD OS=Ralstonia eutropha (s... [more]
FOLD_PHOPO3.265e-5049.07Bifunctional protein folD OS=Photobacterium phosph... [more]
FOLD1_SILPO3.265e-5050.00Bifunctional protein folD 1/3 OS=Silicibacter pome... [more]
FOLD_WOLPM4.264e-5046.98Bifunctional protein folD OS=Wolbachia pipientis w... [more]
FOLD_RHOSK4.264e-5051.17Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]
FOLD_BACWK4.264e-5050.00Bifunctional protein folD OS=Bacillus weihenstepha... [more]
FOLD_BACLD4.264e-5051.38Bifunctional protein folD OS=Bacillus licheniformi... [more]
FOLD_SODGM5.569e-5050.00Bifunctional protein folD OS=Sodalis glossinidius ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
back to top