FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_PROMH (Bifunctional protein folD OS=Proteus mirabilis (strain HI4320) GN=folD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 108/216 (50.00%), Postives = 138/216 (63.89%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A IIDGK +AQTIRSE+AE+V+   +   + PGLAV++VG    SQ YV+ KRKAC EVG  S   DLP+  SEA+L++ +  LN    + GILVQLPLP  I+  KVL  I  +KDVDGFHP NIG+L    R P   PCTP+G + LL+R  + + G  AV++G SNIVG P+SL LL A  T T+ H  T D    V  AD+V+ A G+   I
Sbjct:    3 ARIIDGKTIAQTIRSEVAEKVKQRIKIGKRAPGLAVILVGDNPASQIYVASKRKACDEVGFISRSYDLPDTTSEADLLNLIDTLNEDNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNIGRLCQ--RAPKLRPCTPRGIVTLLERCNIPMNGLNAVIIGASNIVGRPMSLELLLAGCTTTVTHRFTKDLRFHVEHADLVVVAVGKPNFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_DICNV (Bifunctional protein folD OS=Dichelobacter nodosus (strain VCS1703A) GN=folD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 111/218 (50.92%), Postives = 142/218 (65.14%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKR-SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A II+GK +A  IR EI +E        G  PGLAV++VG    S+ YV  K     EVG  S    LP Q ++AEL++K+  LN  P + GILVQLPLP H+N E VL  I   KDVDGFHPLNIG+L     +P  +PCTP GC  +LKR  G ++ GK+A+++GRSNIVG P++ LLL+  ATVTI HS TPD  ++ R+ADIVIAA GQ  ++K
Sbjct:    3 AEIINGKEIAAEIRREIKQETAQFIAATGVRPGLAVILVGNDPASEVYVRNKGIQAEEVGFLSQIYRLPAQTTQAELLAKIVALNNDPQICGILVQLPLPAHLNAEIVLNTIDPNKDVDGFHPLNIGRL--WAGEPCSVPCTPLGCSLILKRYFGDSLAGKKALIIGRSNIVGKPMAALLLQQHATVTIAHSKTPDVPALCRQADIVIAAVGQPELVK 218          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BURS3 (Bifunctional protein folD OS=Burkholderia sp. (strain 383) GN=folD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 105/212 (49.53%), Postives = 146/212 (68.87%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++T+R++ AE    L+ + G  PGLAV++VG    S+ YV  K KAC + G  S     P+ +SEA+L++++ ELN  P +HGILVQLPLPKHI+  KV+  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++ +   + ++G  AVV+GRSNIVG P++++LL A ATVTI HS T D  +  R+ADIV+AA G+
Sbjct:    3 ALLIDGNALSKTLRAQAAERAAALTAR-GHQPGLAVILVGANPASEVYVRNKIKACEDNGFFSLKDAYPDTLSEADLLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHIANAGAL-MTGK-PLFRPCTPYGVMKMFEAHDIPLQGANAVVIGRSNIVGKPMAMMLLDAGATVTICHSKTRDLAAHTRQADIVVAAVGK 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BURCJ (Bifunctional protein folD OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=folD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 106/212 (50.00%), Postives = 144/212 (67.92%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++T+R + AE    L+ + G  PGLAV++VG    S+ YV  K KAC + G  S     P  +SEA+L++++ ELN  P +HGILVQLPLP HI+  KV+  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++ +  G+ ++G  AVV+GRSNIVG P++++LL A ATVTI HS T D  +  READIV+AA G+
Sbjct:    3 ALLIDGNALSKTLRGQAAERAAALTAR-GHQPGLAVILVGENPASEVYVRNKIKACEDNGFFSLKDAYPATLSEADLLARIDELNRDPKIHGILVQLPLPAHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTGK-PLFRPCTPYGVMKMFEAHGIALQGANAVVIGRSNIVGKPMAMMLLDAGATVTICHSKTRDLAAHTREADIVVAAVGK 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD2_ARTAT (Bifunctional protein folD 2 OS=Arthrobacter aurescens (strain TC1) GN=folD2 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 105/221 (47.51%), Postives = 146/221 (66.06%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLA--MKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK--ADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A I+DGKA A  I++E+   V +L+ K G VPGL  ++VG    S  YV  K K CAEVGI+S   DLPE +S+ +L+  V ELN  P+  G +VQLPLPKHI+++ +L  +  +KD DG HP+N+G+L   + G     LPCTPKGC+ELL+R  + +KGKR +VVGR   +G P+ LLL +   +ATV + H+ T D  + +++AD+VIAAAG   MIK
Sbjct:    6 AQILDGKATAAAIKAELTTRVSVLAAK-GIVPGLGTILVGSDPGSTWYVGGKHKDCAEVGIQSIRRDLPEDISQEDLLEVVRELNDNPECTGYIVQLPLPKHIDQDVILEAMDPDKDADGLHPMNLGRLVANVNGEMKSPLPCTPKGCVELLRRHNIELKGKRVLVVGRGVTIGRPIGLLLTRKEVNATVILAHTGTVDLPAELKQADVVIAAAGVPHMIK 225          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_THEYD (Bifunctional protein folD OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=folD PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.273e-50
Identity = 107/216 (49.54%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A I+DGK++A  I+ E+ +EV+ L  + G  P LAVV+VG  K SQ YVS K K C E+ I+S    LPE   E  LI  + ELN    V+GIL+QLPLPKH+N+ KVL  I+  KDVDGF P  +G+L +    PLF+PCTPKG + +L    + ++GK+AVV+GRS IVG P+SLLLLK +ATVT+ HS T + + I ++ADI+  A G+   I
Sbjct:    3 AEILDGKSLALKIKEELKKEVQDLKNQ-GINPCLAVVLVGENKSSQKYVSFKEKTCKELDIQSLVFKLPENTEETSLIKLIDELNENSQVNGILIQLPLPKHLNQNKVLERINPFKDVDGFTPFCLGRLLID--SPLFIPCTPKGIIRMLDEYKINLEGKQAVVIGRSIIVGKPLSLLLLKRNATVTMCHSKTINLQDITKKADILCVAIGREKFI 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_PELUB (Bifunctional protein folD OS=Pelagibacter ubique GN=folD PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.273e-50
Identity = 101/215 (46.98%), Postives = 142/215 (66.05%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            +IDGK +A  +R ++ +EV  L  K+ K+PGL V+++G    SQ YV MK KA  EVG+KS  I  PE V E  ++ K+ ELN    + GILVQLPLPKHI+++KV+  I   KDVDGFHP+N+G L+        +PCTP GC  ++K+    + GK+AV++GRSN+ G P++ LLLK + TVTI HS T D ++   EADI++AA G   ++K
Sbjct:    3 LIDGKKIAAELREQLRQEVVELKAKHNKIPGLTVILIGEMAPSQIYVRMKEKAANEVGLKSEVIRYPEAVEEKTVLDKIEELNKDESISGILVQLPLPKHIDKQKVIETILPGKDVDGFHPMNVGNLSSGYESS--VPCTPLGCYLMIKKIEPNLSGKKAVMIGRSNLNGKPMAQLLLKENCTVTITHSKTKDLKAECLEADIIVAAVGIPELVK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_MANSM (Bifunctional protein folD OS=Mannheimia succiniciproducens (strain MBEL55E) GN=folD PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.273e-50
Identity = 100/216 (46.30%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +I G A+A+ +++E+ +++     +  + PGLAV++VG    SQ YV  KRK+CAE+GI S   DL E  SEA L++ + ELN   D+ GILVQLPLPKHI+  KV+  I+  KDVDGFHP N+G+L    R P    CTP G ++LL+ + + +KG+ AV+VG SNIVG P+++ LL A  TVT+ H  T + E  VR+ADI++ A G++  I
Sbjct:    3 AQVISGSALAKKVKTEVGQKIEQYVAQGKRAPGLAVILVGADPASQVYVGSKRKSCAEIGINSKSYDLEESTSEAALLTLIDELNNDADIDGILVQLPLPKHIDSTKVIERIAPHKDVDGFHPYNVGRLCQ--RIPTLRACTPYGIMKLLETTELNLKGRHAVIVGASNIVGRPMAMELLLAGCTVTVTHRFTTNLEGYVRQADILVVAVGKAEFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BURVG (Bifunctional protein folD OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=folD PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.273e-50
Identity = 105/212 (49.53%), Postives = 146/212 (68.87%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++T+R++ AE    L+ + G  PGLAV++VG    S+ YV  K KAC + G  S     P+ +SEA+L++++ ELN  P +HGILVQLPLP HI+  KV+  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++ +   + ++G  AVV+GRSNIVG P+++LLL+A ATVTI HS T D  +  R+ADIV+AA G+
Sbjct:    3 ALLIDGNALSKTLRAQAAERAAALTAR-GHQPGLAVILVGANPASEVYVRNKIKACEDNGFFSLKDAYPDTLSEADLLARIDELNRDPKIHGILVQLPLPAHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTGK-PLFRPCTPYGVMKMFEAHDIPLQGANAVVIGRSNIVGKPMAMLLLEAGATVTICHSKTRDLAAHTRQADIVVAAVGK 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACHD (Bifunctional protein folD OS=Bacillus halodurans GN=folD PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.273e-50
Identity = 108/216 (50.00%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A ++DGKA+A   R E+  EV  L E+ G  PGLAV++VG    S  YV  K+KAC ++GI S   +LP   SE EL++++  LN  P +HGILVQLPLP+ I+E+ V+  IS  KDVDGFHP+++G++ M G D  FLPCTP G L +L+ + V I GK  VVVGRSNIVG PV  L+L   ATVT  HS T +   I ++ADI+I A G++  I
Sbjct:    3 AVLLDGKALAAKKRDELKSEVTKLKER-GITPGLAVILVGNDPASTVYVRSKQKACEQIGIYSVLKELPASTSEEELLTEIDRLNNDPTIHGILVQLPLPEQISEQAVIERISPAKDVDGFHPISVGRM-MIGED-TFLPCTPFGVLVMLQEANVEIAGKHVVVVGRSNIVGKPVGQLMLNEHATVTYCHSRTKNLTEITKQADILIVAVGRARFI 215          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_PROMH5.569e-5050.00Bifunctional protein folD OS=Proteus mirabilis (st... [more]
FOLD_DICNV5.569e-5050.92Bifunctional protein folD OS=Dichelobacter nodosus... [more]
FOLD_BURS35.569e-5049.53Bifunctional protein folD OS=Burkholderia sp. (str... [more]
FOLD_BURCJ5.569e-5050.00Bifunctional protein folD OS=Burkholderia cepacia ... [more]
FOLD2_ARTAT5.569e-5047.51Bifunctional protein folD 2 OS=Arthrobacter auresc... [more]
FOLD_THEYD7.273e-5049.54Bifunctional protein folD OS=Thermodesulfovibrio y... [more]
FOLD_PELUB7.273e-5046.98Bifunctional protein folD OS=Pelagibacter ubique G... [more]
FOLD_MANSM7.273e-5046.30Bifunctional protein folD OS=Mannheimia succinicip... [more]
FOLD_BURVG7.273e-5049.53Bifunctional protein folD OS=Burkholderia vietnami... [more]
FOLD_BACHD7.273e-5050.00Bifunctional protein folD OS=Bacillus halodurans G... [more]

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Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
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