FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD1_THICR (Bifunctional protein folD 1 OS=Thiomicrospira crunogena (strain XCL-2) GN=folD1 PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.273e-50
Identity = 103/217 (47.47%), Postives = 140/217 (64.52%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A I+DGKA+A  +R  I +EV        K PGLAV++VG    SQ YV  K+ AC + G     + LP + S+AEL++K+ ELN   DVHGI+VQLP+P HI+ E+++  I  +KDVDGFHP N+G+LA   R P   PCTP G + +L ++G+ ++G  AVVVG SNIVG+P++L LL   ATVT+ HS T D    V EAD+V+   G   M+K
Sbjct:    3 AQILDGKAIALELRDSIQKEVEAQVANGKKPPGLAVILVGEDPASQVYVKNKKIACEKAGFNDVSMVLPAETSQAELLAKIDELNTRDDVHGIIVQLPVPDHIDPEEIIERIDPKKDVDGFHPYNMGRLAT--RLPELAPCTPHGVMTMLAKTGIPLRGLNAVVVGASNIVGVPMALELLNERATVTVCHSATKDLPQKVAEADLVVVGVGIPNMVK 217          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHESH (Bifunctional protein folD OS=Shewanella sediminis (strain HAW-EB3) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 105/209 (50.24%), Postives = 137/209 (65.55%), Query Frame = 3
Query:   75 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            IDGKA+AQ+IR+++ E+V    E   +VPGLAV++VG    SQ YV  KR+AC EVG  S   DL    SEAEL++ + E N  P + GILVQLPLP+HI E KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +G+   G  AV+VG SNIVG P+SL LL A  T T  H  T + E  VR+AD+++ A G+
Sbjct:    6 IDGKAIAQSIRTQLKEKVTARKEAGQRVPGLAVILVGADPASQVYVGSKRRACEEVGFLSRSYDLDTTTSEAELLTLIDECNEDPAIDGILVQLPLPEHIEESKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKTTGIDTYGLDAVIVGASNIVGRPMSLELLLAGCTTTTCHRFTRNLEQKVRQADLLVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB9 (Bifunctional protein folD OS=Shewanella baltica (strain OS195) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 108/212 (50.94%), Postives = 137/212 (64.62%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGKA+AQ+IR++++E+V    E   ++PGLAVV+VG    SQ YV  KRKAC EVG  S   DL    SE EL+S +  LN  P + GILVQLPLP HI + KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  AVVVG SNIVG P++L LL A  T T  H  T + E  +R AD+V+ A G+
Sbjct:    3 AQIIDGKAIAQSIRTKLSEKVTARKEAGQRIPGLAVVLVGADPASQVYVGSKRKACEEVGFISRSYDLETSCSEDELLSLIDSLNEDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_PSEHT (Bifunctional protein folD OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 109/216 (50.46%), Postives = 138/216 (63.89%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A IIDGKA+A+ +RS +A+ V     +  + PGLAVV+VG    SQ YV  KRKAC EVG  S   DLP   +E  L+  + ELN   ++ GILVQLPLP+ ++ EK+L  I+  KDVDGFHP NIG+LA   R P   PCTPKG + LL  +GV  KG  AVVVG SNIVG P++L LL A  T T+ H  T D E+ VR AD+++ A G+   I
Sbjct:    3 ANIIDGKAIAKQVRSAVAQRVSERVAQNLRAPGLAVVLVGLDPASQVYVGSKRKACEEVGFISKSFDLPANTTEQTLLELIDELNNDQEIDGILVQLPLPEGLDVEKILERITPHKDVDGFHPYNIGRLAQ--RMPALRPCTPKGIITLLDSTGVRYKGLHAVVVGASNIVGRPMALELLLAGCTTTVCHKFTQDLETHVRRADLLVVAVGKPEFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_METPP (Bifunctional protein folD OS=Methylibium petroleiphilum (strain PM1) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 108/216 (50.00%), Postives = 147/216 (68.06%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A  IDG A+++ +R E+A+    L E +G  PGLAV++VG    SQ YV  K KAC + G+ S     P  ++EAEL+++V  LNA P +HGILVQLPLP HI+  +V+  I+  KDVDGFH  + G L M G+ P F PCTP GC+++L+  G   KGK AVV+GRSNIVG P+++LLL+A+ATVT+ HS TPD     R+ADIV+AA G+  ++
Sbjct:    3 ARAIDGNALSRHLRHEVAQRAATLRE-HGITPGLAVILVGENPASQVYVRNKVKACHDSGLHSVLEHYPAAMTEAELLARVQALNADPAIHGILVQLPLPPHIDAHRVIETIAPHKDVDGFHVASAGAL-MVGQ-PGFKPCTPYGCMKMLESIGYDPKGKHAVVIGRSNIVGKPMAMLLLQANATVTVCHSATPDLALHTRQADIVVAAVGKRKVL 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_HAEIG (Bifunctional protein folD OS=Haemophilus influenzae (strain PittGG) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 103/216 (47.69%), Postives = 146/216 (67.59%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A II G  +++ I++ +A+++    E+  +VPGLAV++VG    SQ YV  KRK+C EVGI S   DLPE  ++ EL++ + +LNA  ++ GILVQLPLPK IN E ++  I  +KDVDGFHP N+G+L    R P    CTP G ++LL+ +G+ + GK AV+VG SNIVG P+SL LL A ATVT+ H  T + E+ VR+ADI++ A G+  +I
Sbjct:    3 AKIISGTELSKQIKANLADKITHYIEQGKRVPGLAVILVGADPASQIYVGNKRKSCEEVGILSKSYDLPETTTQNELLAIIDQLNADKNIDGILVQLPLPKQINAEAIIEHIDPKKDVDGFHPYNVGRLCQ--RIPTLRACTPYGVMKLLETTGIDLHGKHAVIVGASNIVGRPMSLELLLAGATVTVTHRFTKNLENHVRQADILVVAVGKPNLI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BORPD (Bifunctional protein folD OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 108/223 (48.43%), Postives = 148/223 (66.37%), Query Frame = 3
Query:   45 AAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            + P+   A IIDG A+AQ IR ++A  V+ L+ K G  PGLAVV+VG    SQ YV  K  AC + G+ S     P  ++EAEL++++  LN  P +HGILVQLPLP H++  KV+  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++L+  GV ++G  AV+VG SNIVG P+++LLL+A AT+TI +S T D  +  R AD+++ A G+  MI
Sbjct:    7 STPAPSGARIIDGAALAQRIREDVARRVQALAAK-GVRPGLAVVLVGDDPASQVYVRNKVAACEKAGLYSIKEQYPADMTEAELLARIDTLNRDPAIHGILVQLPLPPHMSSHKVIEAIAAEKDVDGFHISNAG-LLMTGQ-PLFRPCTPYGVMKMLEAEGVPLRGAEAVIVGASNIVGKPMAMLLLQAGATITICNSKTRDLAAQTRRADVLVVATGKPGMI 226          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACSU (Bifunctional protein folD OS=Bacillus subtilis GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 109/217 (50.23%), Postives = 148/217 (68.20%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            ATIIDGK  A+  R ++A+EV  L +K G  PGLAV+++G    S SYV  K+KA   +G+ +F +D     ++EAEL+S + + N  P+ HGILVQLPLP HI+E+ V+  IS +KDVDGFHPLN+GK+ + G D  FLPCTP G +ELLK++ + + GK  VVVGRSNIVG PV  LLL  +ATVT  HS T +     ++ADI++ A G++  I
Sbjct:    3 ATIIDGKETAREKREQLAKEVEEL-KKQGVTPGLAVILIGDDPASHSYVRGKKKAAETMGM-NFKLDQFDSSLTEAELLSIIDQYNQDPEFHGILVQLPLPDHISEKAVIERISPDKDVDGFHPLNVGKMLL-GED-TFLPCTPHGIVELLKKTNIDLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTENITEHTKKADILVVAVGRANFI 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_ANADE (Bifunctional protein folD OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 109/215 (50.70%), Postives = 143/215 (66.51%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            +IDGK +A  ++ E+A EVR L+ + G   GL VV VG    S  YV  KRK C EVGI S +  LP   ++AEL++ +  LNA P VHGILVQLPLPKH++E  VL  IS  KD DGFHP N+G L++ G   +  PCTP G + +L  + V  KGKRA+VVGRSNIVG P++++LL+  ATVTI HS T D    V  ADI++AA G++ ++K
Sbjct:    3 LIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPVTTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSI-GIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_ALISL (Bifunctional protein folD OS=Aliivibrio salmonicida (strain LFI1238) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 106/216 (49.07%), Postives = 137/216 (63.43%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A IIDGK ++QT+RSE+   V+   E   + PGLAVV+VG    SQ YV  KR+AC EVG  S   DLP   +EAEL++ +  LN  P++ GILVQLPLP  ++  K+L  I  EKDVDGFHP N+G+L+   R P    CTPKG + LL R  + ++G  AVVVG SNIVG P++L LL A  T T  H  T D E  +R+AD+V+ A G+   I
Sbjct:    3 AQIIDGKLISQTVRSEVGARVKARIEAGLRAPGLAVVLVGQDPASQVYVGSKRRACEEVGFVSKSYDLPTTTTEAELLTLIDTLNQDPEIDGILVQLPLPAGMDSTKILEHIDPEKDVDGFHPYNVGRLSQ--RIPKLRSCTPKGIITLLDRYNIQVRGMHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEHHIRQADLVVVAVGKPNFI 216          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD1_THICR7.273e-5047.47Bifunctional protein folD 1 OS=Thiomicrospira crun... [more]
FOLD_SHESH9.499e-5050.24Bifunctional protein folD OS=Shewanella sediminis ... [more]
FOLD_SHEB99.499e-5050.94Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_PSEHT9.499e-5050.46Bifunctional protein folD OS=Pseudoalteromonas hal... [more]
FOLD_METPP9.499e-5050.00Bifunctional protein folD OS=Methylibium petroleip... [more]
FOLD_HAEIG9.499e-5047.69Bifunctional protein folD OS=Haemophilus influenza... [more]
FOLD_BORPD9.499e-5048.43Bifunctional protein folD OS=Bordetella petrii (st... [more]
FOLD_BACSU9.499e-5050.23Bifunctional protein folD OS=Bacillus subtilis GN=... [more]
FOLD_ANADE9.499e-5050.70Bifunctional protein folD OS=Anaeromyxobacter deha... [more]
FOLD_ALISL9.499e-5049.07Bifunctional protein folD OS=Aliivibrio salmonicid... [more]

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Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
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