FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_ACIAC (Bifunctional protein folD OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=folD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 106/212 (50.00%), Postives = 144/212 (67.92%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++ +R+++A    LL E+ G  PGLAVV+VG    SQ YV  K KAC E G+ S        +SEAEL+++V  LN  P +HGILVQLPLP HI+ +KV+  IS  KDVDGFH  + G L M G  P F PCTP GC+++L+  G  ++GK AVV+GRSNIVG P++L+LL  DATVT+ HS T D ++   +AD+++AA G+
Sbjct:    3 AQLIDGNALSRQLRADVARRAALLKER-GTTPGLAVVLVGDNPASQVYVRNKVKACEESGLHSVLEKYDAAMSEAELLARVDALNNDPSIHGILVQLPLPAHIDAQKVIEAISPAKDVDGFHIASAGAL-MTGM-PGFWPCTPYGCMKMLEHIGYDLRGKHAVVIGRSNIVGKPMALMLLAKDATVTVCHSRTADLKAQTLQADVIVAAVGR 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_TOLAT (Bifunctional protein folD OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 106/216 (49.07%), Postives = 138/216 (63.89%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A IIDGKA+A ++R  +A  V     K  + PGLAVV+VG    SQ YV  KR+AC EVG  S   DL   +++ EL++ + +LNA P + G+LVQLPLP H++  +V+  I   KDVDGFHP N+G+LA   R P   PCTPKG + LL+ +GV IKG  AVVVG SNIVG P++L LL A  T T  H  T   E  VR+ADI++ A G++  I
Sbjct:    3 AKIIDGKAIALSVRQRVAARVAERKAKGLRAPGLAVVLVGEDAASQVYVGSKRRACEEVGFISKSYDLAPTITQDELLALIDQLNADPTIDGVLVQLPLPAHLDSTQVIERILPNKDVDGFHPYNVGRLAQ--RIPALRPCTPKGMMTLLENTGVKIKGMHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKGLEQFVRQADILVVAVGKAEFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB8 (Bifunctional protein folD OS=Shewanella baltica (strain OS185) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 108/212 (50.94%), Postives = 137/212 (64.62%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGKA+AQ+IR++++E+V    E   ++PGLAVV+VG    SQ YV  KRKAC EVG  S   DL    SE EL+S +  LN  P + GILVQLPLP HI + KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  AVVVG SNIVG P++L LL A  T T  H  T + E  +R AD+V+ A G+
Sbjct:    3 AQIIDGKAIAQSIRTKLSEKVTARKEAGQRIPGLAVVLVGADPASQVYVGSKRKACEEVGFISRSYDLETSCSEDELLSLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB5 (Bifunctional protein folD OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 108/212 (50.94%), Postives = 137/212 (64.62%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGKA+AQ+IR++++E+V    E   ++PGLAVV+VG    SQ YV  KRKAC EVG  S   DL    SE EL+S +  LN  P + GILVQLPLP HI + KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  AVVVG SNIVG P++L LL A  T T  H  T + E  +R AD+V+ A G+
Sbjct:    3 AQIIDGKAIAQSIRTKLSEKVTARKEAGQRIPGLAVVLVGADPASQVYVGSKRKACEEVGFISRSYDLETSCSEDELLSLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB2 (Bifunctional protein folD OS=Shewanella baltica (strain OS223) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 108/212 (50.94%), Postives = 137/212 (64.62%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGKA+AQ+IR++++E+V    E   ++PGLAVV+VG    SQ YV  KRKAC EVG  S   DL    SE EL+S +  LN  P + GILVQLPLP HI + KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  AVVVG SNIVG P++L LL A  T T  H  T + E  +R AD+V+ A G+
Sbjct:    3 AQIIDGKAIAQSIRTKLSEKVTARKEAGQRIPGLAVVLVGADPASQVYVGSKRKACEEVGFISRSYDLETSCSEDELLSLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SALTI (Bifunctional protein folD OS=Salmonella typhi GN=folD PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 107/212 (50.47%), Postives = 136/212 (64.15%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGK +AQ +RSE+A++V+       + PGLAVV+VG    SQ YV+ KRKAC EVG  S   DLPE  SEAEL++ +  LNA   + GILVQLPLP  I+  KVL  I+ +KDVDGFHP N+G+L    R P   PCTP+G + LL+R  +   G  AVV+G SNIVG P+S+ LL A  T T+ H  T D    V  AD++I A G+
Sbjct:    3 AKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSNPASQIYVASKRKACDEVGFVSHSYDLPETTSEAELLALIDTLNADNTIDGILVQLPLPAGIDNVKVLERIAPDKDVDGFHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_RHOS4 (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 109/213 (51.17%), Postives = 137/213 (64.32%), Query Frame = 3
Query:   75 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            IDGKA A  +R+ +AEEV  L E +G VPGLAVV+VG    SQ YV  K K   EVG+ SF+  LP   SEAEL++ +  LN  P VHGILVQLPLP H+N + V+  +   KDVDGFH  N+G+L    +    +PCTP GCL +L+     + G  AVVVGRSNIVG P++ LLL    TVTI HS T D  ++ R ADI++AA G+  MI
Sbjct:    6 IDGKAFAAGVRARVAEEVARLKEGHGIVPGLAVVLVGEDPASQVYVGAKGKQTVEVGMASFEHRLPAGTSEAELLALIDRLNHDPAVHGILVQLPLPAHLNADLVINALDPAKDVDGFHISNVGRLGTGQKS--MVPCTPLGCLMMLRDHLGALSGLNAVVVGRSNIVGKPMAQLLLGESCTVTIAHSRTRDLAAVCRGADILVAAVGRPEMI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LEGPL (Bifunctional protein folD OS=Legionella pneumophila (strain Lens) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 104/216 (48.15%), Postives = 139/216 (64.35%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A++IDG+ ++   R+E+ + V+   E+  + PGLAVV++G    S  YVS KRKAC EVGI S   DLP + ++ +LI  ++ELN    + GIL+QLPLPKHINE  ++  I  EKDVDGFHP N+G+LA   R+P   PCTP G + LL    + +K K AVV+G SNIVG P+SL LL A ATVTI H  T   +  V  AD +I A G+  +I
Sbjct:    3 ASLIDGREISALRRTELKQRVQYHVEQGQRAPGLAVVLIGNDPASVIYVSNKRKACEEVGITSHSYDLPAETTQEKLIELINELNQSDKIDGILIQLPLPKHINERTIIEHIKPEKDVDGFHPYNLGRLAQ--RNPFLRPCTPLGIMNLLHHYELNVKRKHAVVIGASNIVGRPMSLELLLAGATVTICHKFTQQLQKFVEIADFLIVATGKMDVI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LEGPC (Bifunctional protein folD OS=Legionella pneumophila (strain Corby) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 104/216 (48.15%), Postives = 139/216 (64.35%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A++IDG+ ++   R+E+ + V+   E+  + PGLAVV++G    S  YVS KRKAC EVGI S   DLP + ++ +LI  ++ELN    + GIL+QLPLPKHINE  ++  I  EKDVDGFHP N+G+LA   R+P   PCTP G + LL    + +K K AVV+G SNIVG P+SL LL A ATVTI H  T   +  V  AD +I A G+  +I
Sbjct:    3 ASLIDGREISALRRTELKQRVQYHVEQGQRAPGLAVVLIGNDPASVIYVSNKRKACEEVGITSHSYDLPAETTQEKLIELINELNQSDKIDGILIQLPLPKHINERTIIEHIKPEKDVDGFHPYNLGRLAQ--RNPFLRPCTPLGIMNLLHHYELNVKRKHAVVIGASNIVGRPMSLELLLAGATVTICHKFTQQLQKFVEIADFLIVATGKMDVI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_ENTS8 (Bifunctional protein folD OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 107/212 (50.47%), Postives = 135/212 (63.68%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGK +AQ +R E+AE+V+       + PGLAVV+VG    SQ YV  KRKAC EVG  S   DLPE  SEAEL++ + ELNA   + GILVQLPLP  I+  KVL  I+ +KDVDGFHP N+G+L    R P   PCTP+G + LL+R  +   G  AVV+G SNIVG P+S+ LL A  T T+ H  T +    V  AD++I A G+
Sbjct:    3 AKIIDGKTIAQQVRLEVAEKVKARVAAGKRAPGLAVVLVGANPASQIYVGSKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADAAIDGILVQLPLPAGIDNVKVLERIAPDKDVDGFHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRQHVENADLLIVAVGK 212          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_ACIAC9.499e-5050.00Bifunctional protein folD OS=Acidovorax avenae sub... [more]
FOLD_TOLAT1.241e-4949.07Bifunctional protein folD OS=Tolumonas auensis (st... [more]
FOLD_SHEB81.241e-4950.94Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_SHEB51.241e-4950.94Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_SHEB21.241e-4950.94Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_SALTI1.241e-4950.47Bifunctional protein folD OS=Salmonella typhi GN=f... [more]
FOLD_RHOS41.241e-4951.17Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]
FOLD_LEGPL1.241e-4948.15Bifunctional protein folD OS=Legionella pneumophil... [more]
FOLD_LEGPC1.241e-4948.15Bifunctional protein folD OS=Legionella pneumophil... [more]
FOLD_ENTS81.241e-4950.47Bifunctional protein folD OS=Enterobacter sakazaki... [more]

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Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
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