FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_DESOH (Bifunctional protein folD OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 101/221 (45.70%), Postives = 144/221 (65.16%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A +I G  + + I  EI  EV+ + EK+GKVPGL  ++VG    S SYV++K +    VG K      P  +SEA+L++ + + N    +HGILVQLPLPKHI+E+KVL  I  +KDVDGFHP+N+G+L + G +  F PCTP G  E++ R+GV   G   VVVGRSNIVG P++ ++L+    A+ATVT+VH+ T + +   + ADI+I AAG   ++K
Sbjct:    3 AKLIKGTEIREEILKEIEAEVKEIKEKHGKVPGLVTILVGESPASISYVTLKIQTAHRVGFKEVQDSQPVDISEADLLALIDKYNKDDSIHGILVQLPLPKHIDEKKVLNAIDPDKDVDGFHPVNVGRLMIGGSEVKFPPCTPAGIQEMIVRAGVETSGAEVVVVGRSNIVGKPIANMMLQKGPGANATVTVVHTRTKNMDEHCKRADILIVAAGVPGLVK 223          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BURM1 (Bifunctional protein folD OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=folD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.241e-49
Identity = 105/212 (49.53%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++T+R++ AE    L+ + G  PGLAV++VG    S+ YV  K KAC + G  S     P  +SEA+L++++ ELN  P +HGILVQLPLP HI+  KV+  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++    G+ ++G  AVV+GRSNIVG P+++LLL+A ATVTI HS T D  +  R+ADI++AA G+
Sbjct:    3 ALLIDGNALSKTLRAQAAERAAALTAR-GHRPGLAVILVGDNPASEVYVRNKIKACEDNGFFSQKDTYPATLSEADLLARIDELNRDPKIHGILVQLPLPAHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTGK-PLFRPCTPYGVMKMFAAHGIALQGANAVVIGRSNIVGKPMAMLLLEAGATVTICHSKTRDLAAHTRQADIIVAAVGK 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_ZYMMO (Bifunctional protein folD OS=Zymomonas mobilis GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 104/218 (47.71%), Postives = 141/218 (64.68%), Query Frame = 3
Query:   63 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            +A IIDGK  +  +R++IAE+V+   ++   VPGLAVV+VG    S+ YV  K +    VG+ S    L    S+ EL+  +  LN  P VHGILVQLPLPKHI+   +L  I  +KDVDGFH +N G+LA+    P  +PCTP GC+ LL+ S  ++KGK A+V+GRS IVG P++ LLL AD TVT+ H HT + E + R+ADIV+AA G    +K
Sbjct:    3 EAIIIDGKEFSSNLRNKIAEDVKAFKKERNVVPGLAVVLVGEDPASRIYVRKKEEMTTAVGMNSLSYRLDANASQQELLDLIETLNHDPAVHGILVQLPLPKHIDTPTILEAIDPDKDVDGFHVVNAGRLAI--GTPSLVPCTPAGCMMLLEHSLGSLKGKNALVIGRSTIVGRPMAQLLLAADCTVTVAHRHTKNLEELCRQADIVVAAVGIPHFVK 218          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHEWM (Bifunctional protein folD OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 106/212 (50.00%), Postives = 137/212 (64.62%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A  IDGKA+AQ+IR+++ E+V    E   +VPGLAV++VG    SQ YV  KR+AC EVG  S   DL    +E +L+S + E N  P + GILVQLPLP+HI E KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  A+VVG SNIVG P+SL LL A  T T  H  T + E  VR+AD+V+ A G+
Sbjct:    3 AQTIDGKAIAQSIRTQLKEKVTARKEAGKRVPGLAVILVGADPASQVYVGSKRRACEEVGFLSRSYDLESSTTEEQLLSLIDECNQDPAIDGILVQLPLPEHIEESKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDALVVGASNIVGRPMSLELLLAGCTTTTCHRFTRNLEQKVRQADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHEPC (Bifunctional protein folD OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 106/212 (50.00%), Postives = 138/212 (65.09%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGKA+AQ+IR++++E+V    E   +VPGLAV++VG    SQ YV  KRKAC EVG  S   DL    +E EL++ +  LN  P + GILVQLPLP HI + KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  AVVVG SNIVG P++L LL A  T T  H  T + E  +R+AD+V+ A G+
Sbjct:    3 AQIIDGKAIAQSIRTKLSEKVTARKEAGQRVPGLAVILVGADPASQVYVGSKRKACEEVGFISRSYDLETNCTEDELLNLIDSLNDDPTIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRQADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_RALSO (Bifunctional protein folD OS=Ralstonia solanacearum GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 110/216 (50.93%), Postives = 145/216 (67.13%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +IDG A+A+ +R+E A+    L+ + G  PGLAV++VG    SQ YV  K KAC + G  S     P  ++EA+L+ ++  LN  P +HGILVQLPLPKHI+  KVL  I+ EKDVDGFH  N G L M G  PLF PCTP GC+++L+     ++G RAVVVG SNIVG P+++LLL+A ATVTI +S T D  +  READIV+AA G+  +I
Sbjct:    3 AQLIDGNALAKQLRTEAAQRAAALTAR-GHQPGLAVILVGDDPASQVYVRNKIKACEDNGFLSIFDRYPADLTEADLLGRIDALNRDPRIHGILVQLPLPKHIDSHKVLEAIAPEKDVDGFHVANAGAL-MTGA-PLFRPCTPYGCMKMLESIDYPVRGARAVVVGASNIVGKPMAMLLLQAGATVTICNSKTRDLAAHTREADIVVAAVGRRNII 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_POLNA (Bifunctional protein folD OS=Polaromonas naphthalenivorans (strain CJ2) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 105/217 (48.39%), Postives = 152/217 (70.05%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A +IDG A+++ +R+E+A+   LL  + G  PGLAVV+VG    SQ YV  K KAC + G+ S     P ++SEA+L+++V  LN  P +HGILVQLPLP HI+ +KV+  IS  KDVDGFH  + G L M G+ P F PCTP GC+++L+  G  ++GK AVV+GRSNIVG P++L+LL+ +ATVTI HS T D +++  +AD+++AA G+  +++
Sbjct:    3 AQLIDGNALSRQLRTEVAQRAALLRAR-GITPGLAVVLVGDNPASQVYVRNKVKACEDNGLHSVLERYPAEMSEADLLARVEALNNDPAIHGILVQLPLPAHIDAQKVIEAISPAKDVDGFHVGSAGAL-MVGQ-PGFWPCTPYGCMKMLESIGYDLRGKHAVVIGRSNIVGKPMALMLLQKNATVTICHSATADLKAMTLQADVIVAAVGKRNVLR 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_MARAV (Bifunctional protein folD OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=folD PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 107/217 (49.31%), Postives = 137/217 (63.13%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A +I+GK +A  +R ++A  V    +K  + PGLAVV+VG    SQ YV  KRKAC + GI S   DLPE  S+A L + V ELN  P V GILVQLPLP H++ + +L +I  +KDVDGFHP NIG+L    R P   PCTP G + LL   G   KG+ AV+VG SNIVG P+S+ LL   AT T+ H  T + E  V EADI++AA G+  +IK
Sbjct:    3 AKLINGKEIAAQVRQQVAAGVEARKQKGLRAPGLAVVLVGHDPASQVYVGNKRKACEQAGILSLSYDLPEDTSQAALEALVDELNENPAVDGILVQLPLPSHLDADPILVKIRPDKDVDGFHPYNIGRLMQ--RKPTLRPCTPAGVITLLDSIGTPYKGQHAVIVGASNIVGRPMSMELLLKGATTTVCHRFTDNLEKFVGEADILVAAVGKPGIIK 217          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_KLEP7 (Bifunctional protein folD OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 107/212 (50.47%), Postives = 134/212 (63.21%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGK +AQ +RSE+AE+V+       + PGLAVV+VG    SQ YV  KRKAC EVG  S   DLPE  SEAEL+  +  LNA   + GILVQLPLP  I+  KVL  I+ +KDVDGFHP N+G+L    R P   PCTP+G + LL+R  +   G  AVV+G SNIVG P+S+ LL A  T T+ H  T +    V  AD++I A G+
Sbjct:    3 AKIIDGKTIAQQVRSEVAEKVKARVAAGKRAPGLAVVLVGSNPASQIYVGSKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADKTIDGILVQLPLPAGIDNVKVLERIAPDKDVDGFHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_KLEP3 (Bifunctional protein folD OS=Klebsiella pneumoniae (strain 342) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 107/212 (50.47%), Postives = 134/212 (63.21%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGK +AQ +RSE+AE+V+       + PGLAVV+VG    SQ YV  KRKAC EVG  S   DLPE  SEAEL+  +  LNA   + GILVQLPLP  I+  KVL  I+ +KDVDGFHP N+G+L    R P   PCTP+G + LL+R  +   G  AVV+G SNIVG P+S+ LL A  T T+ H  T +    V  AD++I A G+
Sbjct:    3 AKIIDGKTIAQQVRSEVAEKVKARVAAGKRAPGLAVVLVGSNPASQIYVGSKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADKTIDGILVQLPLPAGIDNVKVLERIAPDKDVDGFHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGK 212          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_DESOH1.241e-4945.70Bifunctional protein folD OS=Desulfococcus oleovor... [more]
FOLD_BURM11.241e-4949.53Bifunctional protein folD OS=Burkholderia multivor... [more]
FOLD_ZYMMO1.620e-4947.71Bifunctional protein folD OS=Zymomonas mobilis GN=... [more]
FOLD_SHEWM1.620e-4950.00Bifunctional protein folD OS=Shewanella woodyi (st... [more]
FOLD_SHEPC1.620e-4950.00Bifunctional protein folD OS=Shewanella putrefacie... [more]
FOLD_RALSO1.620e-4950.93Bifunctional protein folD OS=Ralstonia solanacearu... [more]
FOLD_POLNA1.620e-4948.39Bifunctional protein folD OS=Polaromonas naphthale... [more]
FOLD_MARAV1.620e-4949.31Bifunctional protein folD OS=Marinobacter aquaeole... [more]
FOLD_KLEP71.620e-4950.47Bifunctional protein folD OS=Klebsiella pneumoniae... [more]
FOLD_KLEP31.620e-4950.47Bifunctional protein folD OS=Klebsiella pneumoniae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
back to top