FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BURCM (Bifunctional protein folD OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 105/212 (49.53%), Postives = 146/212 (68.87%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++T+R++ A+    L+ + G  PGLAVV+VG    S+ YV  K KAC + G  S     P+ +SEA+L++++ ELN  P +HGILVQLPLP HI+  KVL  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++ +   + ++G  AVV+GRSNIVG P++++LL+A ATVTI HS T D  +  R+ADIV+AA G+
Sbjct:    3 ALLIDGNALSKTLRTQAAQRAAALTAR-GHQPGLAVVLVGANPASEVYVRNKIKACEDNGFFSHKDAYPDTLSEADLLARIDELNRDPKIHGILVQLPLPAHIDSHKVLEAIAPEKDVDGFHVANAGAL-MTGK-PLFRPCTPYGVMKMFEAHDIPLQGANAVVIGRSNIVGKPMAMMLLEAGATVTICHSKTRDLAAHTRQADIVVAAVGK 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACFR (Bifunctional protein folD OS=Bacteroides fragilis GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 106/220 (48.18%), Postives = 145/220 (65.91%), Query Frame = 3
Query:   69 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            T+IDGKA+++ ++ EIA EV  +    GK P LA ++VG    S++YV+ K KAC   G KS  I     V+E EL++KV ELN   DV G +VQLPLPKHI+E+KV+  I   KDVDGFHP+N+G++++    P ++  TP G LELLKR  +   GK+ VV+GRSNIVG P++ L+++     DATVT+ HS + D     READI+IAA GQ   +K
Sbjct:    2 TLIDGKAISEQVKQEIAAEVAEIVAHGGKRPHLAAILVGHDGGSETYVAAKVKACEVCGFKSSLIRYESDVTEDELLAKVRELNEDDDVDGFIVQLPLPKHISEQKVIETIDYRKDVDGFHPINVGRMSI--GLPCYVSATPNGILELLKRYRIETSGKKCVVLGRSNIVGKPMAALMMQKAYPGDATVTVCHSRSKDLVKECREADIIIAALGQPNFVK 219          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACFN (Bifunctional protein folD OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 106/220 (48.18%), Postives = 145/220 (65.91%), Query Frame = 3
Query:   69 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            T+IDGKA+++ ++ EIA EV  +    GK P LA ++VG    S++YV+ K KAC   G KS  I     V+E EL++KV ELN   DV G +VQLPLPKHI+E+KV+  I   KDVDGFHP+N+G++++    P ++  TP G LELLKR  +   GK+ VV+GRSNIVG P++ L+++     DATVT+ HS + D     READI+IAA GQ   +K
Sbjct:    2 TLIDGKAISEQVKQEIAAEVAEIVAHGGKRPHLAAILVGHDGGSETYVAAKVKACEVCGFKSSLIRYESDVTEDELLAKVRELNEDDDVDGFIVQLPLPKHISEQKVIETIDYRKDVDGFHPINVGRMSI--GLPCYVSATPNGILELLKRYRIETSGKKCVVLGRSNIVGKPMAALMMQKAYPGDATVTVCHSRSKDLVKECREADIIIAALGQPNFVK 219          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_ALHEH (Bifunctional protein folD OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=folD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 99/212 (46.70%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A I+DGKA+A  +R ++ ++V    E+ G+ PGLAVV+VG    S  YV  KR+AC ++G+ S   +LP + ++ EL++ V ELN   ++ GILVQLPLP HI+E+ V+  I  +KDVDGFHP+N+G+L +  R P   PCTP G + +L  +G+ ++GK AV++G+SNIVG P+++ LL A  T+TI HS T +    VR ADIV+AA G+
Sbjct:    3 AQILDGKAIAAELREQVRKQVEARVERGGRRPGLAVVLVGADPASTVYVGKKRQACEQLGMHSSAHELPAETTQDELLALVDELNGRDEIDGILVQLPLPDHIDEQTVIDRIHPDKDVDGFHPVNMGRLTL--RLPGLRPCTPNGVMTMLAHAGIELEGKDAVIIGQSNIVGRPMAMELLNARCTITICHSRTRNLADRVRAADIVVAAVGR 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: C1TM_YEAST (C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae GN=MIS1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.620e-49
Identity = 95/216 (43.98%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKV-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            I+ G+ +AQ+IR +  +E++ +  K+    P L ++ VG R DS +YV MK KA  +  +      LP +++E EL+ K+ ++N    +HG+L+QLPLP+H++E  +   +  +KDVDGFH  N G+LA KG  P F+PCTP GC++LL+ + V + GK AVV+GRS+IVG P++ LL  A+ATVT+ HSHT +   +V +ADIVIAA G    +K
Sbjct:   37 ILSGRKLAQSIREKANDEIQAIKLKHPNFKPTLKIIQVGARPDSSTYVRMKLKASKDSNVDCIIEKLPAEITEVELLKKISDINDDDSIHGLLIQLPLPRHLDETTITNAVDFKKDVDGFHRYNAGELAKKGGKPYFIPCTPYGCMKLLEEAHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACGIPQYVK 252          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_VIBCH (Bifunctional protein folD OS=Vibrio cholerae GN=folD PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.116e-49
Identity = 107/213 (50.23%), Postives = 135/213 (63.38%), Query Frame = 3
Query:   75 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            IDG  ++QT+RSE+A  V+   +   + PGLAVV+VG    SQ YV  KR+AC EVG  S   DLP   SE  L+S V ELN  P + GILVQLPLP  ++  KVL  I  EKDVDGFHP N+G+LA   R P    CTPKG + LL+R  + ++GK AV+VG SNIVG P++L LL A  T T  H  T D E  +R+ADI++ A G+   I
Sbjct:    6 IDGTLISQTVRSEVAARVKARVQAGLRAPGLAVVLVGEDPASQVYVGSKRRACEEVGFVSKSFDLPATASEEALLSLVEELNNDPQIDGILVQLPLPAGMDTTKVLESIHPEKDVDGFHPYNVGRLAQ--RIPKLRSCTPKGIITLLERYNIPLRGKHAVIVGASNIVGRPMTLELLLAGCTTTTCHRFTQDLEGHIRQADILVVAVGKPNFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_VIBC3 (Bifunctional protein folD OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=folD PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.116e-49
Identity = 107/213 (50.23%), Postives = 135/213 (63.38%), Query Frame = 3
Query:   75 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            IDG  ++QT+RSE+A  V+   +   + PGLAVV+VG    SQ YV  KR+AC EVG  S   DLP   SE  L+S V ELN  P + GILVQLPLP  ++  KVL  I  EKDVDGFHP N+G+LA   R P    CTPKG + LL+R  + ++GK AV+VG SNIVG P++L LL A  T T  H  T D E  +R+ADI++ A G+   I
Sbjct:    6 IDGTLISQTVRSEVAARVKARVQAGLRAPGLAVVLVGEDPASQVYVGSKRRACEEVGFVSKSFDLPATASEEALLSLVEELNNDPQIDGILVQLPLPAGMDTTKVLESIHPEKDVDGFHPYNVGRLAQ--RIPKLRSCTPKGIITLLERYNIPLRGKHAVIVGASNIVGRPMTLELLLAGCTTTTCHRFTQDLEGHIRQADILVVAVGKPNFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_STRTR (Bifunctional protein folD OS=Streptococcus thermophilus GN=folD PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.116e-49
Identity = 102/216 (47.22%), Postives = 142/216 (65.74%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A I+DGKA+A  ++ ++ E+V  L EK   VPGL V++VG    SQ YV  K +A  + G  S  ++L E +SE ELI  + + N  P  HGILVQLPLP HINE ++L  I  +KDVDGFHP+N G L   GR P  +PCTP G +E+L+   V ++GK AV++GRSNIVG P++ LLL+ +ATVT+ HS TP    +  +AD++I A G++  +
Sbjct:    2 AIIMDGKALAVNMQEQLQEKVARLKEKEWIVPGLVVIMVGENPASQVYVRNKERAAKKAGFHSKTVNLSESISEEELIEVIEKYNQNPLFHGILVQLPLPNHINEMRILLAIDPKKDVDGFHPMNTGNL-WNGR-PQMVPCTPAGIMEILREYNVELEGKTAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTPHLAKVCNKADVLIVAIGRAKFV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_STRT1 (Bifunctional protein folD OS=Streptococcus thermophilus (strain CNRZ 1066) GN=folD PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.116e-49
Identity = 102/216 (47.22%), Postives = 142/216 (65.74%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A I+DGKA+A  ++ ++ E+V  L EK   VPGL V++VG    SQ YV  K +A  + G  S  ++L E +SE ELI  + + N  P  HGILVQLPLP HINE ++L  I  +KDVDGFHP+N G L   GR P  +PCTP G +E+L+   V ++GK AV++GRSNIVG P++ LLL+ +ATVT+ HS TP    +  +AD++I A G++  +
Sbjct:    2 AIIMDGKALAVNMQEQLQEKVARLKEKEWIVPGLVVIMVGENPASQVYVRNKERAAKKAGFHSKTVNLSESISEEELIEVIEKYNQNPLFHGILVQLPLPNHINEMRILLAIDPKKDVDGFHPMNTGNL-WNGR-PQMVPCTPAGIMEILREYNVELEGKTAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTPHLAKVCNKADVLIVAIGRAKFV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_STRMU (Bifunctional protein folD OS=Streptococcus mutans GN=folD PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.116e-49
Identity = 102/214 (47.66%), Postives = 139/214 (64.95%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            IIDGKA+AQ ++  +A +V  + EK+G VPGL V++VG    SQ YV  K ++  + G KS  I L + +SE ELI  +   N  P  HGILVQLPLP HIN++K++  I   KDVDGFHP+N G L   GR  + +PCTP G +E+L    V ++GK AV++GRSNIVG P++ LLL+ +ATVT+ HS T     + R AD++I A GQ   +
Sbjct:    4 IIDGKALAQKLQLHLANKVEQMKEKHGLVPGLVVILVGDNPASQVYVRNKERSAIKAGFKSETICLSDSISEEELIEIIEGYNQDPSFHGILVQLPLPAHINDKKIILAIDPHKDVDGFHPMNTGHL-WSGRS-MMVPCTPAGIMEMLSAYHVDLEGKHAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTKHLSEVTRCADVLIVAIGQGNFV 215          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_BURCM1.620e-4949.53Bifunctional protein folD OS=Burkholderia ambifari... [more]
FOLD_BACFR1.620e-4948.18Bifunctional protein folD OS=Bacteroides fragilis ... [more]
FOLD_BACFN1.620e-4948.18Bifunctional protein folD OS=Bacteroides fragilis ... [more]
FOLD_ALHEH1.620e-4946.70Bifunctional protein folD OS=Alkalilimnicola ehrli... [more]
C1TM_YEAST1.620e-4943.98C-1-tetrahydrofolate synthase, mitochondrial OS=Sa... [more]
FOLD_VIBCH2.116e-4950.23Bifunctional protein folD OS=Vibrio cholerae GN=fo... [more]
FOLD_VIBC32.116e-4950.23Bifunctional protein folD OS=Vibrio cholerae serot... [more]
FOLD_STRTR2.116e-4947.22Bifunctional protein folD OS=Streptococcus thermop... [more]
FOLD_STRT12.116e-4947.22Bifunctional protein folD OS=Streptococcus thermop... [more]
FOLD_STRMU2.116e-4947.66Bifunctional protein folD OS=Streptococcus mutans ... [more]

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Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
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