FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LARHH (Bifunctional protein folD OS=Laribacter hongkongensis (strain HLHK9) GN=folD PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.416e-53
Identity = 107/217 (49.31%), Postives = 148/217 (68.20%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A +IDGK ++  +   +A  V+  +E   + P LAV++VG    S+ YV  K+K C + GI+S   DLPE  SEA+L++ V ELNA  DV GILVQLPLP+HIN E V+  I+ +KDVDGFHP N+G+LA+K   PL  PCTP+G + +L+ +G++++GK AVV+G+SNIVG P++L LL   ATVTI HS T D    V+ ADI++AA G    +K
Sbjct:    3 AQLIDGKTISAALLDRVAAGVKARTEAGKRAPALAVILVGNNPASEVYVRNKKKGCEKAGIQSLAYDLPESTSEADLLALVDELNARSDVDGILVQLPLPRHINPETVIERINPKKDVDGFHPYNMGRLAVK--MPLLRPCTPRGVMIMLEHAGISVEGKHAVVIGQSNIVGRPMALELLMERATVTICHSRTRDLPEEVKRADIIVAAVGIPRFVK 217          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_PARL1 (Bifunctional protein folD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=folD PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.155e-53
Identity = 107/217 (49.31%), Postives = 146/217 (67.28%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            ATIIDGK +A  +R+ +A EV  L + +   PGLAVV+VG    S+ YV  K  A  E G+ SF+  LP + SEA++++KV ELNA P VHG LVQ P+P HI+++ V+  I   KD DG HPLN G+LA     P  +P TP+GC+ + KR+G  + GK AV++GRSN+VG PV+ LLLK + TVTI HS + D  SI R+ADI++AA G+  M++
Sbjct:    3 ATIIDGKIIATELRARVAVEVARLKKDHSLTPGLAVVLVGNDPASEVYVRNKGIATTEAGMNSFEFKLPAETSEADVLAKVRELNADPAVHGFLVQFPVPNHISQQAVIDAIDPVKDADGLHPLNAGRLA--SGLPAMVPATPEGCVIMAKRAGGDLSGKHAVIIGRSNLVGKPVAQLLLKENCTVTIAHSRSRDLPSIARQADILVAAVGRPGMVR 217          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_CLOCE (Bifunctional protein folD OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=folD PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.120e-53
Identity = 111/217 (51.15%), Postives = 149/217 (68.66%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A +++G  +A  +++ +  ++  L  K G  PGLAV+IVG    S+ YV+ K+  C E+GIKSF+  LPE  SE EL+  +  LN    V+GILVQLP+PKHINEEKV+  IS +KD D FHP+N+GKL M G+ P FLPCTP G +ELL+ +G+ I GK  VVVGRSNIVG P ++LLL  +ATVTI HS T + E + R AD+++ A G+S  IK
Sbjct:    3 AKVLNGTELAAKVKAGLKAKIDELKSK-GINPGLAVIIVGDDPASRVYVNHKKNDCTEIGIKSFEYALPESTSEEELLDLIETLNNDASVNGILVQLPIPKHINEEKVIAAISPDKDADCFHPMNVGKL-MIGK-PEFLPCTPAGVVELLEENGIEISGKNCVVVGRSNIVGKPQAILLLAKNATVTICHSKTANIEEVCRSADVLVVAIGKSEFIK 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_PASMU (Bifunctional protein folD OS=Pasteurella multocida GN=folD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.045e-52
Identity = 105/216 (48.61%), Postives = 147/216 (68.06%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +I G  +++TI+S++A+++   +++  + PGLAV++VG    SQ YV  KRK+CAE+GI+S   DLPE   E+EL++ + ELNA   V GILVQLPLPKHI+  KV+  I+ EKDVDGFHP N+G+L    R P    CTP G ++LL+ +G+ + GK AV+VG SNIVG P++L LL A  TVT+ H  T D    VR+ADI++ A G+   I
Sbjct:    3 AQVISGTELSKTIKSQVAQKIETYTQQGKRSPGLAVILVGADPASQVYVGSKRKSCAEIGIQSKSYDLPETTQESELLALIDELNADTTVDGILVQLPLPKHIDSTKVIERITPEKDVDGFHPYNVGRLCQ--RIPTLRACTPYGVMKLLETTGIDLHGKHAVIVGASNIVGRPMALELLLAGCTVTVTHRFTKDLAHHVRQADILVVAVGKPKFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_STRA5 (Bifunctional protein folD OS=Streptococcus agalactiae serotype V GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 101/214 (47.20%), Postives = 147/214 (68.69%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            +IDGKA++Q +++E+  +V  L E++G +PGLAV++VG    SQ YV  K ++  E G KS  + L E +S+ ELI  +H+ N    +HGILVQLPLP+HIN++K++  I  +KDVDGFHP+N G L   GR P+ +PCTP G +E+ +   V ++GK AV++GRSNIVG P++ LLL  +ATVT+ HS T +   + +EADI+I A GQ   +
Sbjct:    4 LIDGKALSQKMQAELGRKVERLKEQHGIIPGLAVILVGDNPASQVYVRNKERSALEAGFKSETLRLSESISQEELIDIIHQYNEDKSIHGILVQLPLPQHINDKKIILAIDPKKDVDGFHPMNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_STRA3 (Bifunctional protein folD OS=Streptococcus agalactiae serotype III GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 101/214 (47.20%), Postives = 147/214 (68.69%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            +IDGKA++Q +++E+  +V  L E++G +PGLAV++VG    SQ YV  K ++  E G KS  + L E +S+ ELI  +H+ N    +HGILVQLPLP+HIN++K++  I  +KDVDGFHP+N G L   GR P+ +PCTP G +E+ +   V ++GK AV++GRSNIVG P++ LLL  +ATVT+ HS T +   + +EADI+I A GQ   +
Sbjct:    4 LIDGKALSQKMQAELGRKVERLKEQHGIIPGLAVILVGDNPASQVYVRNKERSALEAGFKSETLRLSESISQEELIDIIHQYNEDKSIHGILVQLPLPQHINDKKIILAIDPKKDVDGFHPMNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_STRA1 (Bifunctional protein folD OS=Streptococcus agalactiae serotype Ia GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 101/214 (47.20%), Postives = 147/214 (68.69%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            +IDGKA++Q +++E+  +V  L E++G +PGLAV++VG    SQ YV  K ++  E G KS  + L E +S+ ELI  +H+ N    +HGILVQLPLP+HIN++K++  I  +KDVDGFHP+N G L   GR P+ +PCTP G +E+ +   V ++GK AV++GRSNIVG P++ LLL  +ATVT+ HS T +   + +EADI+I A GQ   +
Sbjct:    4 LIDGKALSQKMQAELGRKVERLKEQHGIIPGLAVILVGDNPASQVYVRNKERSALEAGFKSETLRLSESISQEELIDIIHQYNEDKSIHGILVQLPLPQHINDKKIILAIDPKKDVDGFHPMNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_RHORT (Bifunctional protein folD OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 112/219 (51.14%), Postives = 145/219 (66.21%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM--KGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A +IDGKA+AQ +R  IA+EV  L    G VPGLAVV+VG    SQ YV  K K    VG+ S    L    SEAE+++KV  LNA P + GILVQLPLP HI+E+K+L  I  +KDVDGFHP+N+G+L++     +   +PCTPKGCL LLK     + GK A+V+GRSNIVG P++ LLL A+ TVT+ HS + D   + R  DIV+AA G+  M+K
Sbjct:    3 AHLIDGKAIAQQLRERIAQEVADLKAHRGLVPGLAVVLVGEDAASQVYVGSKEKMAVAVGMHSVVCRLAATTSEAEVLAKVEALNADPTIDGILVQLPLPAHIDEDKILLAIDPDKDVDGFHPVNVGRLSIGQSNGEHGMVPCTPKGCLMLLKGVLGDLTGKTALVIGRSNIVGKPMAQLLLSANCTVTLAHSRSRDLPDLCRRMDIVVAAVGRPEMVK 221          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_AQUAE (Bifunctional protein folD OS=Aquifex aeolicus GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 109/217 (50.23%), Postives = 148/217 (68.20%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A I+DGK++++ IR EI +EV   + K  + P LAV++VG    S+ YV+ KRKAC +VGIKS    LP+ VSE +L+  ++ELN   +V GILVQLPLPKHI++ +V+  IS EKDVDGFHP N+GKL  +  D  F+PCTP G   LLK  G+ +KGK   +VG   IVG P+SLL+L  +ATV++ H HT D +   +EADI+I+A G   +IK
Sbjct:    2 ALILDGKSLSKKIREEIKKEVENFTSKGFRPPALAVILVGNDPASEIYVNNKRKACEKVGIKSLFYHLPQDVSEEKLLGLIYELNMNEEVDGILVQLPLPKHIDQTRVILSISPEKDVDGFHPENMGKLVAQIEDG-FIPCTPLGIDILLKHYGIDVKGKDVTIVGAGFIVGRPLSLLMLWRNATVSVCHIHTKDVKKFTKEADILISATGVPHLIK 217          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LACLS (Bifunctional protein folD OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=folD PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 109/215 (50.70%), Postives = 145/215 (67.44%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            +IDGKA+A  +++E+  +V  L E  G VPGLAV++VG    SQ YV  K +    +G+ S  + LPE VSE EL+  + + N     HGILVQLPLPKHI+EEKVL  I  EKDVDGFHP+N+G+L     +PL +P TP G +E+ +   V + GKRAVV+GRSNIVG P++ LL+ ADATVTI HS T +   + +EADI++ A G+  MIK
Sbjct:    3 LIDGKALAAKMQAELKVKVDKLKEA-GSVPGLAVILVGEDPASQIYVRNKARQATAIGLNSSVVRLPETVSEKELLELIEQYNQSEQWHGILVQLPLPKHISEEKVLLAIDPEKDVDGFHPMNMGRL--WAGNPLMIPSTPAGIMEMFREYNVELSGKRAVVIGRSNIVGKPMAQLLMMADATVTIAHSRTKNLRELTKEADILVVAIGRDRMIK 214          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_LARHH1.416e-5349.31Bifunctional protein folD OS=Laribacter hongkongen... [more]
FOLD_PARL13.155e-5349.31Bifunctional protein folD OS=Parvibaculum lavament... [more]
FOLD_CLOCE4.120e-5351.15Bifunctional protein folD OS=Clostridium celluloly... [more]
FOLD_PASMU2.045e-5248.61Bifunctional protein folD OS=Pasteurella multocida... [more]
FOLD_STRA53.488e-5247.20Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_STRA33.488e-5247.20Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_STRA13.488e-5247.20Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_RHORT3.488e-5251.14Bifunctional protein folD OS=Rhodospirillum rubrum... [more]
FOLD_AQUAE3.488e-5250.23Bifunctional protein folD OS=Aquifex aeolicus GN=f... [more]
FOLD_LACLS4.555e-5250.70Bifunctional protein folD OS=Lactococcus lactis su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
back to top