FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD2_ROSDO (Bifunctional protein folD 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=folD2 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.037e-51
Identity = 106/216 (49.07%), Postives = 141/216 (65.28%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            ATIIDGKA A  +R+++AE V  + + +G  PGLAVV+VG    SQ YV  K K   E G+ S++  L    SEA+L++ V +LN  P+VHGILVQLPLPKH++E+ ++  I   KDVDGFH  N+G L    +    +PCTP GCL +L+    ++ G  AVV+GRSNIVG P++ LLL    TVTI HS T D   +VR ADIV+AA G+  M+
Sbjct:    3 ATIIDGKAFAAKVRAQVAEHVTRIKQDHGITPGLAVVLVGEDPASQVYVRSKGKQTVEAGMNSYEHKLDADTSEADLLAVVDKLNKDPNVHGILVQLPLPKHLDEDLIINSIDPAKDVDGFHISNVGLLGTGQKS--MVPCTPLGCLMMLREHHGSLSGMNAVVIGRSNIVGKPMAQLLLNDSCTVTIAHSRTKDLPDVVRGADIVVAAVGRPEMV 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_VIBSL (Bifunctional protein folD OS=Vibrio splendidus (strain LGP32) GN=folD PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.578e-51
Identity = 109/213 (51.17%), Postives = 139/213 (65.26%), Query Frame = 3
Query:   75 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            IDGK ++QT+RSE+A  V+  ++   + PGLAVV+VG    SQ YV  KRKAC EVG  S   DLP   +E EL++ V +LN  P++ GILVQLPLP  I+  +VL  I+ EKDVDGFHP N+G+LA   R P    CTPKG + LL R  + ++GK AVVVG SNIVG P++L LL A  T T  H  T D E  VR+AD+V+ A G+   I
Sbjct:    6 IDGKLISQTVRSEVAARVKARTQAGLRAPGLAVVLVGEDPASQVYVGSKRKACEEVGFVSKSYDLPATATEDELLTLVDQLNEDPEIDGILVQLPLPAGIDSTQVLERITPEKDVDGFHPYNVGRLAQ--RMPKLRSCTPKGIITLLDRYNIDLRGKHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVVVVAVGKPNFI 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_SHEON (Bifunctional protein folD OS=Shewanella oneidensis GN=folD PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.578e-51
Identity = 108/212 (50.94%), Postives = 139/212 (65.57%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A IIDGKA+AQ+IR+++ E+V    E   +VPGLAV++VG    SQ YV  KRKAC EVG  S   DL    SEAEL++ + +LN  P + GILVQLPLP HI + KV+  I  +KDVDGFHP N+G+LA   R P+   CTP G + L+K +GV   G  AVVVG SNIVG P++L LL A  T T  H  T + E  +R+AD+V+ A G+
Sbjct:    3 AQIIDGKAIAQSIRTQLREQVTARKEAGQRVPGLAVILVGADPASQVYVGSKRKACEEVGFISRSYDLDTSCSEAELLALIDQLNDDPSIDGILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQ--RIPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRQADLVVVAVGK 212          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_EUBR3 (Bifunctional protein folD OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=folD PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.578e-51
Identity = 110/216 (50.93%), Postives = 145/216 (67.13%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +IDGK ++  I+ E+ EEV  L +K G    LAV+ VG    S  YV  K+KAC  VGIKS   +L E+ +E E++  + +LNA   V+GIL QLPLPKHI+E+KV+  I  +KDVDGF P ++G  AM    P FLPCTP G ++LLKRS + I GK  VVVGRSNIVG P+SLL+L+ +ATVT+ HSHT D + + + ADI+I A G+   I
Sbjct:    2 ANLIDGKLISTQIKDELKEEVTELKKK-GIEGCLAVIQVGNDPASSVYVRNKKKACEYVGIKSLSYELAEETTEDEILKLIEKLNADSSVNGILCQLPLPKHIDEDKVIDAIDPKKDVDGFSPQSVG--AMVIGKPGFLPCTPAGIIQLLKRSNIDIDGKSCVVVGRSNIVGKPMSLLMLRENATVTVCHSHTKDLKDVCKNADILIVAIGKPKFI 214          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACA2 (Bifunctional protein folD OS=Bacillus amyloliquefaciens (strain FZB42) GN=folD PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.578e-51
Identity = 111/218 (50.92%), Postives = 150/218 (68.81%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            ATIIDGK  A+  R ++A+EV  L  + G VPGLAV+++G    S SYV+ K+KA   +G+K F +D     ++EAEL++ + + N  P+ HGILVQLPLP HI+E+ V+  IS +KDVDGFHPLN+GK+ + G D  FLPCTP G +ELLK++ V + GK  VVVGRSNIVG PV  LLL  +ATVT  HS T +     ++ADI++ A G++  IK
Sbjct:    3 ATIIDGKETAKEKREQLAKEVEELKAQ-GVVPGLAVILIGDDPASVSYVTGKKKAAETMGMK-FKLDRFDSSLTEAELLTVIDQYNQNPEFHGILVQLPLPDHISEKAVIERISPDKDVDGFHPLNVGKMLL-GED-TFLPCTPHGIVELLKKTNVDLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTKNMSEHTKKADILVVAVGKANFIK 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: C1TC_DROME (C-1-tetrahydrofolate synthase, cytoplasmic OS=Drosophila melanogaster GN=pug PE=1 SV=4)

HSP 1 Score: 200.675 bits (509), Expect = 6.578e-51
Identity = 110/220 (50.00%), Postives = 148/220 (67.27%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGK-VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLP--KHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A II G AVA++IR E+  EV  +S++    VPGL +V VGGR+DS  Y+ MK KA  E+GI +  + LP  ++E EL+ K+++LN  P VHGI+VQ+PL     I+  ++   +S EKDVDG H +N G+LA+ G    FLPCTP GCLEL++RSGV I G RAVV+GRS IVG P + LL  A+ATVT+ HS T + E I R ADI++   G + M+K
Sbjct:   38 AKIISGTAVAKSIREELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGIDAAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITDAVSPEKDVDGLHTVNEGRLAI-GDLGGFLPCTPWGCLELIRRSGVEIAGARAVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVK 256          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_STAHJ (Bifunctional protein folD OS=Staphylococcus haemolyticus (strain JCSC1435) GN=folD PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.591e-51
Identity = 103/216 (47.69%), Postives = 152/216 (70.37%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A I+DGK +++  R  + E+V  L EK G  P L+V++VG    SQSYV+ K+KA  ++G+ S  + L E  SE +++ ++  LN    V GILVQ+PLPK ++E+K+L  I+ EKDVDGFHP NIGKL +   +  F+PCTP G +E+LK + + ++GK AVV+GRS+IVG PVS LLL+A+ATVTI+HS T D  S +++AD++++A GQ  ++
Sbjct:    3 AKILDGKQISKDYRQGLQEQVEALKEK-GYTPKLSVILVGNDGASQSYVNSKKKAAEKIGMISEIVHLDEDTSEEDVLKELDRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPSNIGKLYID--EQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQANATVTILHSRTKDMHSHLKDADVIVSAVGQPGLV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_METBU (Bifunctional protein folD OS=Methanococcoides burtonii (strain DSM 6242) GN=folD PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.591e-51
Identity = 97/222 (43.69%), Postives = 142/222 (63.96%), Query Frame = 3
Query:   51 PSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            P      IIDG+A+A+ + +E+  +V  L  + G  PGL+ ++VG    S+ YV +K KAC  VGI + D  LPE +++ EL+  +  LNA  D+HGIL+QLPLPKH+NE++ +  I   KD DGFHP N+G+L +   +   +PCTPKG +  L+  GV I+GK AV+VG SN+VG P++ +L+  +ATV+I H  T D     R+ADI++ A G   +IK
Sbjct:    2 PDTDNTKIIDGRAIAKKVEAEVKADVERLVREKGITPGLSAILVGEDPASKMYVRLKHKACGRVGIFAEDQHLPEDITQEELLEAISSLNARKDIHGILLQLPLPKHLNEQEAMNAIDPAKDADGFHPFNMGQLLIGVEE--LVPCTPKGIIRALEEYGVEIQGKHAVIVGHSNVVGKPMAAMLVNRNATVSICHVFTKDVTKFTRDADILVVATGVKHLIK 221          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD3_SPHWW (Bifunctional protein folD 3 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=folD3 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.591e-51
Identity = 111/217 (51.15%), Postives = 141/217 (64.98%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A IIDGKA A  +R+ +A  V       G+ PGLAVV+VG    SQ YV  K KA  E G++SF+  LP   SE EL++ V  LNA   V GILVQLPLP HI+E+KV+  I  +KDVDGFH +N G+LA+   +  ++PCTP GCL LLK     + G  AVV+GRSNIVG P++ LLL  + TVTI HS T D   +VR ADIV+AA G+  M++
Sbjct:    9 AEIIDGKAYAAGLRARVATAVPAFRVAAGRAPGLAVVLVGEDAASQVYVRSKHKATVEAGMESFEHRLPATASETELLALVERLNADDRVDGILVQLPLPPHIDEKKVIATIDPDKDVDGFHVVNAGRLAV--GEAGYVPCTPLGCLMLLKDRRGDLSGLEAVVIGRSNIVGKPMAALLLAENCTVTIAHSRTRDLAEVVRRADIVVAAVGRPEMVR 223          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD1_ROSDO (Bifunctional protein folD 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=folD1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.591e-51
Identity = 109/216 (50.46%), Postives = 141/216 (65.28%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            AT+IDGKA A  +R+++AE V  L   +G  PGLAVV+VG    SQ YV  K K   EVG+KS +  L    SE +L++ V +LN  PD+HGILVQLPLP H++E+ V+  I+ EKDVDGFH  N+G L    +    +PCTP GCL +L+    ++ G  AVVVGRSNIVG P++ LLL    TVTI HS T D   +VR ADIV+AA G+  M+
Sbjct:    3 ATLIDGKAFAARVRAQVAEHVTRLKADHGITPGLAVVLVGQDPASQVYVRSKGKQTTEVGMKSVEHKLDADTSETDLLAVVDQLNKDPDIHGILVQLPLPGHLDEDLVINSIAPEKDVDGFHISNVGLLGTGQKS--MVPCTPLGCLMMLRDYHGSLLGMDAVVVGRSNIVGKPMAQLLLGDSCTVTIAHSRTKDLADVVRRADIVVAAVGRPEMV 216          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD2_ROSDO5.037e-5149.07Bifunctional protein folD 2 OS=Roseobacter denitri... [more]
FOLD_VIBSL6.578e-5151.17Bifunctional protein folD OS=Vibrio splendidus (st... [more]
FOLD_SHEON6.578e-5150.94Bifunctional protein folD OS=Shewanella oneidensis... [more]
FOLD_EUBR36.578e-5150.93Bifunctional protein folD OS=Eubacterium rectale (... [more]
FOLD_BACA26.578e-5150.92Bifunctional protein folD OS=Bacillus amyloliquefa... [more]
C1TC_DROME6.578e-5150.00C-1-tetrahydrofolate synthase, cytoplasmic OS=Dros... [more]
FOLD_STAHJ8.591e-5147.69Bifunctional protein folD OS=Staphylococcus haemol... [more]
FOLD_METBU8.591e-5143.69Bifunctional protein folD OS=Methanococcoides burt... [more]
FOLD3_SPHWW8.591e-5151.15Bifunctional protein folD 3 OS=Sphingomonas wittic... [more]
FOLD1_ROSDO8.591e-5150.46Bifunctional protein folD 1 OS=Roseobacter denitri... [more]

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Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
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