FC929855

Overview
NameFC929855
Unique NameFC929855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11050 contig Ccv1_Contig11050:765..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO2_RICPR (Probable NADP-dependent malic enzyme OS=Rickettsia prowazekii GN=RP373 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = 2
Query:   32 EFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE-LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 658
            EF+ AVK        I  ED      F + EK  +     VF+DD  GTA +  AGLI+A      +L D + +  GAG A     + LIAL + K           KI L D+KG+I   R   +  +K+ +A + + ++ L +++N     + IG S +G   TK+++  MA    KPIIF+++NP    E T E+   + +  AI A+G
Sbjct:  121 EFINAVKYLGYSFGGINLEDIKAPECFLIEEKLKSLMDIPVFHDDQHGTAIITAAGLINAAYLTNRTLKDLKIVINGAGAAAIACIDLLIALGVDK----------SKIILCDTKGVIYKGRTSGMNKWKERYASDTK-IRTLTESLN--NADVFIGLSVKG-AVTKDMISKMA---HKPIIFAMANP--DPEITPED-IKFVRDDAIIATG 312          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO2_HAEIN (NADP-dependent malic enzyme OS=Haemophilus influenzae GN=maeB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  146 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEA 619
            VF+DD  GTA +  A +I++++ +G  + D R +  GAG A      L+         + L   R+ I + DSKG++   R + +   KK +A E    ++L DA+      I +G S  G   T+++V++MA+    PII +L+NP    E T  EA
Sbjct:  158 VFHDDQHGTAIISAAAIINSLRIVGKKIEDVRLVASGAGAASIACLNLL---------LSLGMKRENITVCDSKGVVYKGRDDKMDQTKKEYAIEDNGWRKLADAIP--NADIFLGCSAAG-ALTQDMVKSMAA---HPIILALANP--NPEITPPEA 298          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO4_BACSU (Probable NAD-dependent malic enzyme 4 OS=Bacillus subtilis GN=ytsJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 63/215 (29.30%), Postives = 99/215 (46.05%), Query Frame = 2
Query:   77 IQFEDFVNHNAFDLLE--KYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK---PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPG 706
            +  ED    N F + E  K  T   VF+DD  GTA V +AGL++A+K  G S++  + +  GAG AG  I +L+                + I + DSKG I   R   +   K     + ++      L D +  +   + IG S  G   TKE+V++MA   + PIIF+++NP    E   E+A     G ++  +G    P +  + +  PG
Sbjct:  130 VNLEDIAAPNCFIIEERLKKETNIPVFHDDQHGTAIVTVAGLVNALKLSGKSMSSIKVVANGAGAAGIAIIKLLH-----------HYGVRDIVMCDSKGAIYEGRPNGMNDVKNEVAKFTNQDRKDGSLKDVI--VDADVFIGVSVAG-ALTKEMVQSMA---KDPIIFAMANP--NPEIMPEDAR--EAGASVVGTGRSDFPNQVNNVLAFPG 323          
The following BLAST results are available for this feature:
BLAST of FC929855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
MAO2_RICPR1.018e-1132.08Probable NADP-dependent malic enzyme OS=Rickettsia... [more]
MAO2_HAEIN3.870e-1131.65NADP-dependent malic enzyme OS=Haemophilus influen... [more]
MAO4_BACSU8.621e-1129.30Probable NAD-dependent malic enzyme 4 OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC34001B07EF PostHarvC1 Citrus clementina cDNA clone C34001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929855 ID=FC929855; Name=FC929855; organism=Citrus clementina; type=EST; length=712bp
TATTGGTCAGGAATATGCTGAACTGCTACATGAATTCATGACAGCTGTGA
AGCAGAATTATGGGGAGAGAATTCTCATTCAGTTTGAAGACTTTGTAAAC
CACAATGCCTTTGATCTGCTTGAAAAATATGGCACTACTCATCTTGTTTT
CAATGATGATATTCAGGGGACAGCATCTGTGGTCCTTGCAGGTCTTATTT
CAGCGATGAAATTTCTTGGAGGAAGCTTAGCCGACCAAAGATTTTTATTC
CTTGGTGCAGGAGAAGCTGGCACTGGAATAGCAGAACTCATAGCTCTTGA
GATATCCAAACAGACAAATATGCCGCTAGAAGAGACTCGCAAGAAGATTT
GGCTTGTGGATTCAAAGGGATTGATCGTCAGTTCCCGTTTAGAATCTCTC
CAACATTTCAAAAAGCCGTGGGCTCATGAACATGAACCTGTTAAGGAACT
AGTAGATGCCGTTAATGCAATCAAGCCAACAATTCTGATTGGAACATCAG
GACAAGGTCGAACATTTACTAAAGAAGTTGTTGAGGCTATGGCCTCCTTG
AATGAGAAACCCATTATTTTTTCTCTTTCCAACCCAACTTCACAGTCTGA
ATGCACCGCAGAAGAAGCCTATACGTGGAGCCAGGGCCGAGCCATTTTTG
CAAGTGGGAGCCCCTTTGACCCTTTCGAATATGGGGACAATGTTTTTGTG
CCTGGCCAGGCA
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