FC929855

Overview
NameFC929855
Unique NameFC929855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11050 contig Ccv1_Contig11050:765..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAOM_ASCSU (NAD-dependent malic enzyme, mitochondrial (Fragment) OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.338e-53
Identity = 107/236 (45.34%), Postives = 158/236 (66.95%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQ 709
            G++Y  LL  FM A  + YG++ LIQFEDF N NAF LL+KY   + +FNDDIQGTASV++AGL++  +     ++ +++LF GAG A TGIAE+I  ++  +  +  EE   +I+L+D  GL+  +R E + +H +  +A +      +++ + A +P  LIG S     F +EV+ AMA +NE+PIIF+LSNPTS++ECTAEEAYT++ G A++ASGSPF  FE   + + PGQ
Sbjct:  282 GKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNE-GISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ--FAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQ 514          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_VIBFM (NAD-dependent malic enzyme OS=Vibrio fischeri (strain MJ11) GN=sfcA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44
Identity = 100/240 (41.67%), Postives = 140/240 (58.33%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI---------VSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            G EYA+ + +F+ AV++ + E  L+QFEDF   NA  LLE+Y      FNDDIQGTA+V +  L++A K  G SL++QR  FLGAG AG GIAE I  ++  +  +   + R ++++VD  GL+            RL       K W  E EP   LVD +   KPT+LIG SG    F+KEV++ M    E+PI+F LSNPTS+ E T  +   W+ G+A+ A+GSPFDP  +    +
Sbjct:  217 GDEYADFVEDFIQAVQRRWPEA-LVQFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTFLGAGSAGCGIAEAIIAQMVSE-GISDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTKDWISE-EPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQEMHKHCERPIVFPLSNPTSRVEATPNDIIRWTNGQALVATGSPFDPVSHNGQTY 453          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_VIBF1 (NAD-dependent malic enzyme OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=sfcA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44
Identity = 100/240 (41.67%), Postives = 140/240 (58.33%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI---------VSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            G EYA+ + +F+ AV++ + E  L+QFEDF   NA  LLE+Y      FNDDIQGTA+V +  L++A K  G SL++QR  FLGAG AG GIAE I  ++  +  +   + R ++++VD  GL+            RL       K W  E EP   LVD +   KPT+LIG SG    F+KEV++ M    E+PI+F LSNPTS+ E T  +   W+ G+A+ A+GSPFDP  +    +
Sbjct:  217 GDEYADFVEDFIQAVQRRWPEA-LVQFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTFLGAGSAGCGIAEAIIAQMVSE-GISDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTKDWVSE-EPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQEMHKHCERPIVFPLSNPTSRVEATPNDIIRWTDGQALVATGSPFDPVAHNGQTY 453          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPW (NAD-dependent malic enzyme OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=sfcA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.915e-44
Identity = 99/237 (41.77%), Postives = 145/237 (61.18%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD 688
            G+EY E +  FM AV + + +  LIQFEDF   NA  LLE+Y   +  FNDDIQGTA+V +  L++A K  G  L  QR  FLGAG AG GIAE I  ++  +  +   + RK++++VD  G++  S + +L  F++  A + + +           L+D VN  KPTILIG SG    F++E+++AM S  E+PI+F LSNPTS+ E T ++   W++G+A+ A+GSPF+P    D
Sbjct:  217 GEEYTEFVEAFMQAVHRRWPDA-LIQFEDFAQKNAMPLLERYKDQYCCFNDDIQGTAAVTVGSLLAACKAAGTQLCQQRITFLGAGSAGCGIAEAIVAQMVSE-GIAESQARKQVFMVDRWGML-QSNMPNLLPFQQKLAQDCDDITNWDNFSENISLLDVVNNAKPTILIGVSGAPGLFSEEIIKAMHSHCERPIVFPLSNPTSRVEATPKDILHWTKGQALVATGSPFEPVVVDD 450          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEHH (NAD-dependent malic enzyme OS=Shewanella halifaxensis (strain HAW-EB4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.726e-44
Identity = 98/240 (40.83%), Postives = 146/240 (60.83%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            G+EY E +  FM AV + + +  LIQFEDF   NA  LLE+Y   +  FNDDIQGTA+V +  L++A K     L++QR  FLGAG AG GIAE I  ++  +  +   + RK++++VD  G++  S + +L  F++  A + + +           L+D VN  KPT+LIG SG    FT+E+++AM S   +PI+F LSNPTS+ E T ++   W+QG+A+ A+GSPF+P    D  +
Sbjct:  217 GEEYKEFVEAFMQAVNRRWPDA-LIQFEDFAQKNAMPLLERYKDQYCCFNDDIQGTAAVTVGSLLAACKAAKSKLSEQRITFLGAGSAGCGIAEAIVAQMVSE-GISEAQARKQVFMVDRWGML-QSNMPNLLPFQQKLAQQCDDLTNWDNFSDNISLLDVVNNAKPTVLIGVSGAPGLFTEEIIKAMHSHCPRPIVFPLSNPTSRVEATPKDILHWTQGKALVATGSPFEPVVIDDTTY 453          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHIBS (NAD-dependent malic enzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=sfcA PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.721e-43
Identity = 96/241 (39.83%), Postives = 146/241 (60.58%), Query Frame = 2
Query:    2 IGQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            I  EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  219 IDDEYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEEAARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHIB3 (NAD-dependent malic enzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sfcA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.721e-43
Identity = 96/241 (39.83%), Postives = 146/241 (60.58%), Query Frame = 2
Query:    2 IGQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            I  EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  219 IDDEYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEEAARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEFN (NAD-dependent malic enzyme OS=Shewanella frigidimarina (strain NCIMB 400) GN=sfcA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.721e-43
Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK---------ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G EYAE + EFM AV + + +  LIQFEDF   NA  LLE+Y   +  FNDDIQGTA+V +  L++A K     L++QR  FLGAG AG GIAE I   +  +  +  ++ R ++++VD  GL++ + + +L  F++  A     ++          L+D VN  KPT+LIG SG    FT+E+++AM S  ++PI+F LSNPTS+ E T ++   W+ G+A+ A+GSPF+P
Sbjct:  217 GDEYAEFVEEFMQAVSRRWPDA-LIQFEDFAQKNAMPLLERYKDQYCSFNDDIQGTAAVTVGSLLAACKAANSKLSEQRITFLGAGSAGCGIAEAIVATMVSE-GISDQQARSQVFMVDRWGLLLDN-MPNLLPFQQKLAQPCATIEAWDNYSDNISLLDVVNNAKPTVLIGVSGSPGLFTEEIIKAMHSHCKRPIVFPLSNPTSRVEATPKDILNWTSGQALVATGSPFEP 445          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHESR (NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-7) GN=sfcA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.248e-43
Identity = 100/232 (43.10%), Postives = 142/232 (61.21%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G+EYAE +  FM AV   + +  LIQFEDF   NA  +LE+Y   +  FNDDIQGTA+V +  L++A K  G  L  QR  FLGAG AG GIAE I  ++  +  +  E+ R ++ +VD  GL++ + + +L  F++  A +   +           L+D VN +KPT+LIG SG    FT+E+V AM S  E+PIIF LSNPTS+ E T ++   W+ G+A+ A+GSPF+P
Sbjct:  217 GEEYAEFIEAFMQAVHVRWPDT-LIQFEDFAQKNAMPILERYKERYCCFNDDIQGTAAVTVGSLLAACKAAGTELNKQRVAFLGAGSAGCGIAEAIVAQMVSE-GISDEQARSQVCMVDRWGLLLDN-MPNLLPFQQKLAQKCADISHWNNFSDNISLLDVVNNVKPTVLIGVSGAPGLFTEEIVRAMHSHCERPIIFPLSNPTSRVEATPKDILHWTSGQALVATGSPFEP 445          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHESM (NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.248e-43
Identity = 100/232 (43.10%), Postives = 142/232 (61.21%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G+EYAE +  FM AV   + +  LIQFEDF   NA  +LE+Y   +  FNDDIQGTA+V +  L++A K  G  L  QR  FLGAG AG GIAE I  ++  +  +  E+ R ++ +VD  GL++ + + +L  F++  A +   +           L+D VN +KPT+LIG SG    FT+E+V AM S  E+PIIF LSNPTS+ E T ++   W+ G+A+ A+GSPF+P
Sbjct:  217 GEEYAEFIEAFMQAVHVRWPDT-LIQFEDFAQKNAMPILERYKERYCCFNDDIQGTAAVTVGSLLAACKAAGTELNKQRVAFLGAGSAGCGIAEAIVAQMVSE-GISDEQARSQVCMVDRWGLLLDN-MPNLLPFQQKLAQKCADISHWNNFSDNISLLDVVNNVKPTVLIGVSGAPGLFTEEIVRAMHSHCERPIIFPLSNPTSRVEATPKDILHWTSGQALVATGSPFEP 445          
The following BLAST results are available for this feature:
BLAST of FC929855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
MAOM_ASCSU5.338e-5345.34NAD-dependent malic enzyme, mitochondrial (Fragmen... [more]
MAO1_VIBFM3.468e-4441.67NAD-dependent malic enzyme OS=Vibrio fischeri (str... [more]
MAO1_VIBF13.468e-4441.67NAD-dependent malic enzyme OS=Vibrio fischeri (str... [more]
MAO1_SHEPW5.915e-4441.77NAD-dependent malic enzyme OS=Shewanella piezotole... [more]
MAO1_SHEHH7.726e-4440.83NAD-dependent malic enzyme OS=Shewanella halifaxen... [more]
MAO1_SHIBS1.721e-4339.83NAD-dependent malic enzyme OS=Shigella boydii sero... [more]
MAO1_SHIB31.721e-4339.83NAD-dependent malic enzyme OS=Shigella boydii sero... [more]
MAO1_SHEFN1.721e-4341.81NAD-dependent malic enzyme OS=Shewanella frigidima... [more]
MAO1_SHESR2.248e-4343.10NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]
MAO1_SHESM2.248e-4343.10NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34001B07EF PostHarvC1 Citrus clementina cDNA clone C34001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929855 ID=FC929855; Name=FC929855; organism=Citrus clementina; type=EST; length=712bp
TATTGGTCAGGAATATGCTGAACTGCTACATGAATTCATGACAGCTGTGA
AGCAGAATTATGGGGAGAGAATTCTCATTCAGTTTGAAGACTTTGTAAAC
CACAATGCCTTTGATCTGCTTGAAAAATATGGCACTACTCATCTTGTTTT
CAATGATGATATTCAGGGGACAGCATCTGTGGTCCTTGCAGGTCTTATTT
CAGCGATGAAATTTCTTGGAGGAAGCTTAGCCGACCAAAGATTTTTATTC
CTTGGTGCAGGAGAAGCTGGCACTGGAATAGCAGAACTCATAGCTCTTGA
GATATCCAAACAGACAAATATGCCGCTAGAAGAGACTCGCAAGAAGATTT
GGCTTGTGGATTCAAAGGGATTGATCGTCAGTTCCCGTTTAGAATCTCTC
CAACATTTCAAAAAGCCGTGGGCTCATGAACATGAACCTGTTAAGGAACT
AGTAGATGCCGTTAATGCAATCAAGCCAACAATTCTGATTGGAACATCAG
GACAAGGTCGAACATTTACTAAAGAAGTTGTTGAGGCTATGGCCTCCTTG
AATGAGAAACCCATTATTTTTTCTCTTTCCAACCCAACTTCACAGTCTGA
ATGCACCGCAGAAGAAGCCTATACGTGGAGCCAGGGCCGAGCCATTTTTG
CAAGTGGGAGCCCCTTTGACCCTTTCGAATATGGGGACAATGTTTTTGTG
CCTGGCCAGGCA
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