FC929856

Overview
NameFC929856
Unique NameFC929856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:9..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: ADH6_YEAST (NADP-dependent alcohol dehydrogenase 6 OS=Saccharomyces cerevisiae GN=ADH6 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 56/182 (30.77%), Postives = 75/182 (41.21%), Query Frame = 3
Query:  144 DVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXX-SNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            D+ IK+  CG+C +DIH      G    P+                  S                C  C  C+ D E YC K + +Y+  Y DG  +QGG+A  + V + FVV IP+ +    AAPLLC G+TV+SPL   G                       +KAMG    VIS S +K
Sbjct:   35 DIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCGPG-KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK 215          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 52/217 (23.96%), Postives = 86/217 (39.63%), Query Frame = 3
Query:   69 IGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYC--------NKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKEWK 695
            +G+   D    +    +  +     +V I++ Y GICH+D H I  +   +++P+                   +              C +C+ C   +EQ+C        N+K     D+   G  T GG++  +++ Q FV K P  + +E+ APL+CAG T +SPL    +                      AKAMG H   I+   + EWK
Sbjct:   72 LGFGVTDVGKPVELLVFDRKKPTNNEVSIEIYYTGICHSDWHFIVGEW-KADFPLIPGHELIGRVIDIGPNVDKYSIGDIVCVSPVIDSCGHCKMCTHHIEQHCMNGATEIYNQKTRLPGDIKPSGPITYGGYSNIVIIKQHFVYKFPKNLDIERCAPLMCAGATTYSPLRQAKVGPG-MKVGIVGIGGLGHIAVKIAKAMGAHVVAIT---RTEWK 283          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: ADH7_YEAST (NADP-dependent alcohol dehydrogenase 7 OS=Saccharomyces cerevisiae GN=ADH7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 44/146 (30.14%), Postives = 65/146 (44.52%), Query Frame = 3
Query:  135 GAEDVYIKVLYCGICHTDIHQIKNDLG-MSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYC-NKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFG 566
            G  DV +++  CGIC +D H    + G +    +                 +                C  C  C++D EQYC N  + +    Y DG  +QGGFA  + + + F ++IP+ +    AAPLLC G+TVFSPL   G
Sbjct:   32 GDHDVDVEIEACGICGSDFHIAVGNWGPVPENQILGHEIIGRVVKVGSKCHTGVKIGDRVGVGAQALACFECERCKSDNEQYCTNDHVLTMWTPYKDGYISQGGFASHVRLHEHFAIQIPENIPSPLAAPLLCGGITVFSPLLRNG 177          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 51/185 (27.57%), Postives = 64/185 (34.59%), Query Frame = 3
Query:  138 AEDVYIKVLYCGICHTDIHQIKNDLGMS-NYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            A ++ I V Y G+CHTD+H  K D  +    P+                  NF              C +C  CE   E  C +   S       G    G F +    D     +IP G  L + AP+LCAGVTV+  L    LK                     AKAMG     I   D KE
Sbjct:   58 ANEILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNCLQADLS-------GYTHDGSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKALKTADLKPGQWVAISGAAGGLGSLAVQYAKAMGLRVLGIDGGDGKE 235          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: ADH1_NEUCR (Alcohol dehydrogenase 1 OS=Neurospora crassa GN=adh-1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 47/189 (24.87%), Postives = 68/189 (35.98%), Query Frame = 3
Query:  123 LRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSN-YPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            ++  G ++V I V Y G+CHTD+H +K D  ++   P+                 +                C  C  C    E  C   + S       G    G F +  +     V KIP G  LE  AP+LCAG+TV+  L   G++                     A AMG H   I   ++K
Sbjct:   29 VQKPGPDEVLINVKYSGVCHTDLHAMKGDWPLATKMPLVGGHEGAGVVVAKGELVTEVEVGDHAGIKWLNGSCLACSFCMQADEPLCPHALLS-------GYTVDGSFQQYAIAKAAHVAKIPKGCDLETTAPVLCAGITVYKGLKESGVRPGQCVAIVGAGGGLGSMAIQYANAMGLHAIAIDGGEEK 210          
The following BLAST results are available for this feature:
BLAST of FC929856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ADH6_YEAST8.866e-1630.77NADP-dependent alcohol dehydrogenase 6 OS=Saccharo... [more]
YL498_MIMIV1.415e-1323.96Probable zinc-type alcohol dehydrogenase-like prot... [more]
ADH7_YEAST2.044e-1230.14NADP-dependent alcohol dehydrogenase 7 OS=Saccharo... [more]
ADH4_KLULA3.855e-1127.57Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH1_NEUCR3.855e-1124.87Alcohol dehydrogenase 1 OS=Neurospora crassa GN=ad... [more]

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Properties
Property NameValue
Genbank descriptionC34001B08EF PostHarvC1 Citrus clementina cDNA clone C34001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929856 ID=FC929856; Name=FC929856; organism=Citrus clementina; type=EST; length=707bp
CACATAACTCAGACGCTAAAACGAAAAAGTCACAAAAAATGGGAAGCCTT
GATACCGAGAGAGCAACGATAGGGTGGGCTGCAAAGGATCCATCTGGGAT
TCTGTCACCTTACACTTACACTCTCAGAAACACAGGAGCAGAAGATGTTT
ACATTAAGGTTCTTTACTGTGGAATCTGCCACACTGATATTCATCAAATA
AAAAATGATCTGGGCATGTCTAACTATCCAATGGTTCCAGGACATGAGGT
GGTGGGTGAAGTGAAGGAAGTGGGTTCAGAAGTGAGCAACTTTAAAGTAG
GAGACAAGGTTGGTGTTGGGGTTCTCGTTGGTTGTTGCAGAAACTGCAGG
CCGTGCGAGGCAGATGTTGAGCAGTACTGCAACAAGAAAATCTGGTCCTA
TAACGATGTTTACACCGATGGCAAGCCTACACAAGGCGGCTTTGCTGAGT
CCATGGTCGTTGATCAAAAGTTTGTGGTGAAAATACCAGATGGAATGGCA
CTGGAGCAGGCGGCACCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCC
CCTGAGCCACTTTGGATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGG
GGCTCGGAGGAGTAGGCCACATGGGGGTTTTGATAGCTAAGGCGATGGGA
CACCATGNTACTGTGATTAGCTCTTCTGATAAGAAAGAGTGGAAGCTATG
GAGCATC
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