FC929857

Overview
NameFC929857
Unique NameFC929857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 2
Query:   80 FTLVCAMALSSISRGRRKQLPPGPRPYPVIGNLLELGGK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSF--RDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQ 466
            F  +    L S  RG+R +LPPGP P PV GN L++G    H++L  LAK  G I+ LR+GQ   VVVSSP ++K +L      F  R R V   + +   +     +V+      W+ +R++  +  FT++
Sbjct:   14 FVAILVAILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPELSKEVLHTQGVEFGSRTRNVVFDIFTGKGQ----DMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C71DI_MENSP (Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 46/161 (28.57%), Postives = 93/161 (57.76%), Query Frame = 2
Query:   41 KMDLFISCILWLVFTLVCAMALSSISRGRRKQ-LPPGPRPYPVIGNLLEL-GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKIKDLL 517
            ++DL +S I+ LV T + ++ ++   + + +Q LPP P   PVIG+L  L GG P      +A+ +GP+  ++LG+V +VV+SS   AK  +K  D +F DR   + + S    + +  +++ P +  W+ +R++C   + + + + +   +R+++I+ L+
Sbjct:    2 ELDL-LSAIIILVATYIVSLLINQWRKSKSQQNLPPSPPKLPVIGHLHFLWGGLPQHVFRSIAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRF--DGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLI 159          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C71DI_MENGR (Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 46/161 (28.57%), Postives = 93/161 (57.76%), Query Frame = 2
Query:   41 KMDLFISCILWLVFTLVCAMALSSISRGRRKQ-LPPGPRPYPVIGNLLEL-GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKIKDLL 517
            ++DL +S I+ LV T + ++ ++   + + +Q LPP P   PVIG+L  L GG P      +A+ +GP+  ++LG+V +VV+SS   AK  +K  D +F DR   + + S    + +  +++ P +  W+ +R++C   + + + + +   +R+++I+ L+
Sbjct:    2 ELDL-LSAIIILVATYIVSLLINQWRKSKSQQNLPPSPPKLPVIGHLHFLWGGLPQHVFRSIAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRF--DGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLI 159          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C71AK_ARATH (Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=CYP71A20 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 44/162 (27.16%), Postives = 85/162 (52.47%), Query Frame = 2
Query:   65 ILWLVFTLVCAMALSSISRG---RRKQLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDR---KVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKIKDLLAYVDE 532
            ++ L  T + A+ L SI +    +   LPP P   PVIGNL +L    H+SL  L+  +GP+M L  G+   ++VSS  +A  ++K HD    +R   KV + +LS         + + P    W+ ++ +C  ++  ++ + + + +R ++IK ++  +++
Sbjct:    5 LITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSLRSLSLRYGPLMLLHFGRTPVLIVSSADVAHDVMKTHDLVCANRPKTKVVDKILSGGR-----DVAFAPYGEYWRQMKSICIQNLLNNKMVRSYEKIREEEIKRMIEKLEK 161          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   80 FTLVCAMALSSISRGRRKQLPPGPRPYPVIGNLLELGGK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSF--RDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQ 466
            F  V    L S  RG+R +LPPGP P PV GN L++G    H++L  LAK  G I  LR+GQ   VVVSSP ++K +L      F  R R V   + +   +     +V+      W+ +R++  +  FT++
Sbjct:   14 FVAVLVAILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQ----DMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 55/232 (23.71%), Postives = 113/232 (48.71%), Query Frame = 2
Query:   74 LVFTLVCAMALSSISRG---------RRKQLPPGPRPYPVIGNLLELG-GKPHKSLAKLAKIHGP--IMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKIKDLLAYVDENCRMGKAIDFGQAAFNTSLNLLSNTIFS--IDVVDPSE--REFKDTVWGIMEEAGKPNLSEHFPLLK 721
            L+   VCA+ +S +S G         R +   PGP+ +P+IG+L+++  G PH+ L  LA++HG   +MS  LG    V+ S P +A+ +L      F +R + ++   L       ++ + P    W+ LR++ + H+F  +++ A++  R+  +  +L  + +       +   +     +LN +  ++F    D+   +E  ++ ++ V    +  G  N ++H P L+
Sbjct:   48 LLIVAVCAVLVSWLSPGGCAWAGRHKRGRVAIPGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLTS--PHFANRPLKQSAQQLLFGR---AIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMSHENEEVKKLREMVDEGFQLLGAFNWADHLPWLR 274          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C71BH_ARATH (Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=CYP71B17 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 58/199 (29.15%), Postives = 87/199 (43.72%), Query Frame = 2
Query:  137 LPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKIKDLLAYVDENCRMGKAIDFGQAAFNTSLNLLSNTIFSIDVVDPSEREFKDT------VWGIMEEAGKPNLSEHFPL 715
            LPP P   PVIGNL ++G  PH+S  +LA+  G +M L LG V   V+SS   A+ +L+ HD     R  P  V S         L + P    WK  R+     +F S+KL +   ++  +   L+  + E+      +D  +  F  + ++L    F        E EF DT      V+      G    S+ FP+
Sbjct:   30 LPPSPPKLPVIGNLHQVGELPHRSFRRLAERTGHVMLLHLGFVPVTVISSREAAEEVLRTHDLDCCSR--PNLVGSRLISRGFKDLNFTPYGEEWKERRRFLVGELFCSKKLQSFIYIKEVECNFLVKKLSESAVDQSPVDLSKTLFWLAASILFRVAFGQSF---HESEFTDTDKIDELVFETETAQGSFTCSDFFPI 223          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   44 MDLFI--SCILWLVFTLVCAMALSSISRGRRKQLPPGPRPYPVIGNLLELGGK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSF--RDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQ 466
            MDL +    +L L   ++ A  +S + RG++ +LPPGP P PV GN L++G    H++L+  AK  G I  LR+GQ   VVVSSP +AK +L      F  R R V   + +   +     +V+      W+ +R++  +  FT++
Sbjct:    1 MDLLLLEKTLLGLFAAIIVASIVSKL-RGKKFKLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ----DMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C71BS_ARATH (Cytochrome P450 71B28 OS=Arabidopsis thaliana GN=CYP71B28 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 57/192 (29.69%), Postives = 93/192 (48.44%), Query Frame = 2
Query:  134 QLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKL-------DANQDLRRKKIKDL-----LAYVDEN---------CRMGKAIDFGQAAF----------NTSLNLLSNTIFS 616
            +LPPGP+  P+IGNL +      ++   L++ +GPI+ LR G V  VV+SS   A+ +LK HD     R  PE V +    +    + + P    W+ +RKL  + +F+S+KL       +   DL  KK+ DL     L  +++          CR+G  I+  +  F          + S +++ N+IFS
Sbjct:   27 KLPPGPKKLPIIGNLHQRRELHPRNSRNLSEKYGPIVFLRYGFVPVVVISSKEAAEEVLKTHDLECCSR--PETVGTRAISYNFKDIGFAPYGEDWRTMRKLSVVELFSSKKLQSFRYIREEENDLCVKKLSDLASRRSLVNLEKTLFTLVGSIVCRIGFGINLRECEFVDEDSIDDLVHKSEDVIRNSIFS 216          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C71AN_ARATH (Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=CYP71A23 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 41/154 (26.62%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   44 MDLFISCILWLVFTLVCAMALSSISRGRRKQLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKI 505
            M LF+  I+  + T++      ++++       P P   P+IGNL +L   PH+SL  L+  +GP+M L  G V  +V S+   A+ +LK HD  F  R  P + +     +   ++   P    W+ ++ +  +H+ +++ + + QD+R+++I
Sbjct:    1 MILFLCLIILFIITILFFKKHKTVNKIINF---PSPPRLPLIGNLHQLSQHPHRSLCYLSHRYGPLMLLHFGSVPVIVASTAEAARDVLKTHDRVFASR--PRSKIFEKLLYKSRNMASAPYGEYWRQMKSVSVLHLLSNKMVRSFQDVRQEEI 149          
The following BLAST results are available for this feature:
BLAST of FC929857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TCMO_POPTM1.232e-1234.85Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
C71DI_MENSP1.232e-1228.57Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D1... [more]
C71DI_MENGR1.232e-1228.57Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D... [more]
C71AK_ARATH1.232e-1227.16Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=C... [more]
TCMO_POPKI1.609e-1235.61Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
C78A4_PINRA2.745e-1223.71Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C71BH_ARATH2.745e-1229.15Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=C... [more]
TCMO_CATRO3.586e-1233.56Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
C71BS_ARATH3.586e-1229.69Cytochrome P450 71B28 OS=Arabidopsis thaliana GN=C... [more]
C71AN_ARATH3.586e-1226.62Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC34001B09EF PostHarvC1 Citrus clementina cDNA clone C34001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929857 ID=FC929857; Name=FC929857; organism=Citrus clementina; type=EST; length=721bp
GATTGAGGGTTCGAAATAAAGAGAACTTAAAGTAAGCTCAAAGATGGATT
TGTTCATTAGCTGTATACTATGGCTTGTATTCACATTGGTTTGCGCGATG
GCTTTAAGTTCCATTTCTAGAGGAAGACGCAAACAGCTTCCACCGGGACC
GAGGCCATATCCGGTGATCGGAAACCTCCTGGAGCTGGGTGGTAAACCTC
ACAAGTCACTGGCCAAGCTTGCCAAGATTCATGGCCCCATAATGAGTCTA
AGACTTGGCCAGGTGACCACAGTAGTGGTTTCTTCTCCAAGCATGGCTAA
AGCTATACTTAAAGAACATGATTCATCATTCAGAGATCGAAAGGTCCCTG
AAGCAGTCTTGTCCCTGCCTAACCGGCACCCTGAATTCAGCTTGGTCTGG
CTGCCAGTCTCACCACTATGGAAAAATCTTCGAAAACTATGCAACATGCA
TATTTTCACTAGTCAGAAACTCGATGCCAATCAAGACCTCCGACGCAAGA
AAATCAAAGACCTTCTTGCTTATGTTGATGAAAATTGCCGTATGGGCAAA
GCAATAGATTTTGGCCAAGCTGCTTTTAATACTTCACTTAATTTGTTATC
CAACACGATTTTTTCTATTGATGTCGTTGATCCCAGTGAGCGAGAGTTTA
AGGATACAGTTTGGGGTATCATGGAAGAAGCAGGAAAGCCTAACTTGTCC
GAACATTTTCCTCTACTAAAA
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