FC929857

Overview
NameFC929857
Unique NameFC929857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   44 MDLFI--SCILWLVFTLVCAMALSSISRGRRKQLPPGPRPYPVIGNLLELGGK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSF--RDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQ 466
            MDL +    +L L      A+ +S + RG+R +LPPGP P P+ G  L++G    H++L   AK  G I  LR+GQ   VVVSSP +AK +L      F  R R V   + +   +     +V+      W+ +R++  +  FT++
Sbjct:    1 MDLLLLEKTLLALFIAATIAVTISKL-RGKRFKLPPGPIPVPIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQ----DMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C519C_DICDI (Probable cytochrome P450 519C1 OS=Dictyostelium discoideum GN=cyp519c1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 45/191 (23.56%), Postives = 99/191 (51.83%), Query Frame = 2
Query:   56 ISCILWLVFTLVCAMALSSISRGRRKQ--LPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKIKDLLAYVDENCRMGKAIDFGQAAFNTSLNLLSNTIFSID 622
            ++ +L + + LVC +    I + + K+  +P      P+IG+L +LG  PH++L KL + +G I SL LG + TV+V+ PS+ K I+ +  ++F DR   ++  S        +L+++  +  W  +RK+ +  I  ++ +   +++   + K L+  +  + ++ +     +     S++++   +F  D
Sbjct:    1 MNILLLIFYFLVCFLIFDFIKKNKVKKYDVPTLSYALPIIGHLYKLGVNPHRNLTKLVEKNGGIFSLWLGDIKTVIVTDPSINKEIMVKQFTNFSDRPRLKSFESFTG--GGVNLIFIDYNEKWPVIRKIVSSSITKTKIISNYKEVIENQTKILINSMRTHSKINEPFKSKKYFGKFSISIVLGIMFKQD 189          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 47/146 (32.19%), Postives = 76/146 (52.05%), Query Frame = 2
Query:   44 MDLFI--SCILWLVFTLVCAMALSSISRGRRKQLPPGPRPYPVIGNLLELGGK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSF--RDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQ 466
            MDL +    +L L    + A+ +S + RG+  +LPPGP P PV GN L++G    H++L  LAK    I+ LR+ Q   VV+SSP +AK +L      F  R R V   + +   +     +V+      W+ +R++  +  FT++
Sbjct:    1 MDLLLLEKTLLALFLAAITAITISKL-RGKPFKLPPGPFPVPVFGNWLQVGDDLNHRNLTDLAKRFAEILLLRMEQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ----DIVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: CY250_MOUSE (Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   65 ILWLVFTLVCAMALSSISRG-RRKQLPPGPRPYPVIGNLLELGGKP-HKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDR 340
            IL LVFTL C   LS   +   R +LPPGP P P+IGN+L++  K   +S   L+K++GP+ +L LG   TVV+      K  L +H   F  R
Sbjct:    4 ILVLVFTLSCLFLLSLWRQSSERGKLPPGPTPLPIIGNILQINVKDICQSFTNLSKVYGPVYTLYLGNKPTVVLHGYEAVKEALVDHGEEFAGR 97          
BLAST of FC929857 vs. ExPASy Swiss-Prot
Match: C71BG_ARATH (Cytochrome P450 71B16 OS=Arabidopsis thaliana GN=CYP71B16 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 49/186 (26.34%), Postives = 85/186 (45.70%), Query Frame = 2
Query:   56 ISCILWLVFTLVCAMALSSISRGRRKQLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILKEHDSSFRDRKVPEAVLSLPNRHPEFSLVWLPVSPLWKNLRKLCNMHIFTSQKLDANQDLRRKKIKDLLAYVDENCRMGKAIDFGQAAFNTSLNLLSNTIF 613
            IS +   + TLV  + +    +  +  LPP P  +PVIGNL ++G  PH+S  +LA+  G +M L  G V   V+SS   A+ +L+ HD     R  P+ V S         + + P    W+  RK     +F  +K+     +  ++   L+  + E+      +D  ++ F  + ++L    F
Sbjct:    3 ISLLCLFLITLVSLIFVVKKIKHSKWDLPPSPPTFPVIGNLHQVGELPHRSFQRLAERTGHVMLLHFGFVPVTVISSREAAEEVLRTHDLKCCTR--PKLVGSRLISRGFKDISFTPYGEEWRERRKFLVRELFCFKKVQYFGYIVEEECNLLVKKLTESAVGRPPVDLSKSLFWLAASILFRIAF 186          
The following BLAST results are available for this feature:
BLAST of FC929857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TCMO_MEDSA5.178e-1132.88Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
C519C_DICDI5.178e-1123.56Probable cytochrome P450 519C1 OS=Dictyostelium di... [more]
TCMO_PEA6.762e-1132.19Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
CY250_MOUSE8.832e-1141.49Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE... [more]
C71BG_ARATH8.832e-1126.34Cytochrome P450 71B16 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B09EF PostHarvC1 Citrus clementina cDNA clone C34001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929857 ID=FC929857; Name=FC929857; organism=Citrus clementina; type=EST; length=721bp
GATTGAGGGTTCGAAATAAAGAGAACTTAAAGTAAGCTCAAAGATGGATT
TGTTCATTAGCTGTATACTATGGCTTGTATTCACATTGGTTTGCGCGATG
GCTTTAAGTTCCATTTCTAGAGGAAGACGCAAACAGCTTCCACCGGGACC
GAGGCCATATCCGGTGATCGGAAACCTCCTGGAGCTGGGTGGTAAACCTC
ACAAGTCACTGGCCAAGCTTGCCAAGATTCATGGCCCCATAATGAGTCTA
AGACTTGGCCAGGTGACCACAGTAGTGGTTTCTTCTCCAAGCATGGCTAA
AGCTATACTTAAAGAACATGATTCATCATTCAGAGATCGAAAGGTCCCTG
AAGCAGTCTTGTCCCTGCCTAACCGGCACCCTGAATTCAGCTTGGTCTGG
CTGCCAGTCTCACCACTATGGAAAAATCTTCGAAAACTATGCAACATGCA
TATTTTCACTAGTCAGAAACTCGATGCCAATCAAGACCTCCGACGCAAGA
AAATCAAAGACCTTCTTGCTTATGTTGATGAAAATTGCCGTATGGGCAAA
GCAATAGATTTTGGCCAAGCTGCTTTTAATACTTCACTTAATTTGTTATC
CAACACGATTTTTTCTATTGATGTCGTTGATCCCAGTGAGCGAGAGTTTA
AGGATACAGTTTGGGGTATCATGGAAGAAGCAGGAAAGCCTAACTTGTCC
GAACATTTTCCTCTACTAAAA
back to top