FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: NUDF_ASPFU (Nuclear distribution protein nudF homolog OS=Aspergillus fumigatus GN=nudF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 57/192 (29.69%), Postives = 86/192 (44.79%), Query Frame = 2
Query:  212 GHQSAVYTMKVNP--AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ--------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSF---------------------SDASE*IYTGGIDNDVKVWDLR 691
            GH  AV  +       GT++AS S D  I LW    + KN   L GH +++  + +   G+         ++SAS DKTLR WDV TG  +K ++ H  +V +  PS  G  L+ +G DD   +LWD+       TF   ++ I  V+                      S ++E   TG  D  +++WD R
Sbjct:  155 GHTKAVLDVDYGGPRGGTLLASCSSDLTIKLWDPSDNYKNIRTLPGHDHSVSSVRFIPSGAAGSPMSGNLLVSASRDKTLRIWDVTTGYCVKTLSGHVDWVRAVAPSIDGRFLLAAG-DDRIPRLWDLSSAETKSTFLGHEHVIECVAIAPAASYPHLAVLSGLKKPPPASSSAEFFATGSRDKTIRLWDSR 345          

HSP 2 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  203 LLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHW--TTDGSQIISASPDKTLRAWD-VETGKQIKKMAEHNSFVNSC--CPS-RRGPP----LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            +L GH++ V  +  +P  + +ASGS D  I +W    G+ +    +KGH  A+LD+ +     G+ + S S D T++ WD  +  K I+ +  H+  V+S    PS   G P    L+VS S D T ++WD+     ++T       + AV+ S     +   G D   ++WDL   E+K
Sbjct:  110 ILEGHRNPVTCVAFHPVFSSLASGSDDTTIKIWDWELGELER--TVKGHTKAVLDVDYGGPRGGTLLASCSSDLTIKLWDPSDNYKNIRTLPGHDHSVSSVRFIPSGAAGSPMSGNLLVSASRDKTLRIWDVTTGYCVKTLSGHVDWVRAVAPSIDGRFLLAAGDDRIPRLWDLSSAETK 287          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: YQ95_SCHPO (Uncharacterized WD repeat-containing protein C18.05c OS=Schizosaccharomyces pombe GN=SPCC18.05c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 46/152 (30.26%), Postives = 74/152 (48.68%), Query Frame = 2
Query:  230 YTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVW 682
            Y   +  +G  + S S D  + LW      K    + GH+  +    ++ DG  I +AS D ++R WD +TGK +  +  H + V  C  S     L+VS S D T K+WD+R +      P  + Q+ AV +S   + + +GG D  V++W
Sbjct:  350 YEACLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWS-TDSRLLVSSSQDTTLKVWDVRSKKMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500          

HSP 2 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 49/180 (27.22%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPA-GTVIASGSHDRDIFLWHVHGDCKN---FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI-KKMAEHNSFVNSCC------PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESKH 709
            + GH   + + + +P+  + + +GS D    LW    DC        +KGH N +  + W  D S I + S D T+R WD + G  I   +  H   + + C          GP L+ SGS D T ++W+++ R  + T       IT V +      IY+   D  +++WD + G+  H
Sbjct:  130 MNGHDGTIISAQFSPSTSSRLVTGSGDFTARLW----DCDTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIGDALRRHTKPIMALCWQPLHLAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWG-GQNWIYSSSYDKTIRIWDAKDGKCLH 304          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_XENTR (WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 51/171 (29.82%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +       ++AS   DR IFLW V+         +      L G+K++I  L     G+ I+S S +K LR WD  T +++ K+  H   V +   +R G    +SGS DGT +LW + Q+  I T+    + + A+  ++    +Y+GG D  +   DLR
Sbjct:  113 LRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCQKLMKLKGHTDNVKALLLNRDGTQ-CLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEGFTHVYSGGRDRKIYCTDLR 282          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR31_MOUSE (WD repeat-containing protein 31 OS=Mus musculus GN=Wdr31 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 50/175 (28.57%), Postives = 75/175 (42.86%), Query Frame = 2
Query:  209 TGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI-----------TAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            TGH+  +  +   P      S S D+ + +W + G       L GH   +  L  + D SQ+ + S D +L  WDV TG+ +++ +   + V   C  PS    P +V  S+D T +LWD R       FP K  I           T +S S        GG   +  +WDLR+
Sbjct:  100 TGHEREITKIACIPKANQFFSASRDKTVLMWDLQGSSHPRQQLSGHAMVVTGLAVSPDSSQLCTGSRDNSLLLWDVGTGQCVERASVSRNLVTHLCWVPSE---PYIVQTSEDKTIRLWDSRGLQMAHMFPTKQHIQTHCEVSVDGHTCISCSSG-----FGGEGCEATLWDLRQ 266          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 52/193 (26.94%), Postives = 88/193 (45.60%), Query Frame = 2
Query:  149 APGPNGKQRTSSLESPIMLLTGHQSA--------VYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703
            A G N       +++   L T H+ +        V T+  +P G  + +G+ DR I LW +      + V  GH+  I  L ++ +G  I+S S D+T R WDVETG+ I K+   N    +          +  GS D   ++W +      +    K  + +++FS  S  + +G +D  +KVW+L+   S
Sbjct:  329 ATGCNQAANVFDVQTGKKLFTLHEESPDPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRY-VFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGV--TAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWELQATRS 518          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  161 NGKQRTSSLES--PIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA-SE*IYTGGIDNDVKVW 682
            +G  +  SL+S  P+  + GH   V  +  +P+G  + +  +DR   LW +    +  +  +GH   + D+ +  DGS   +   D   R WD+ TG+ I  +  H   +     S  G   + +GS D T K+WD+RQR  + T P  +  +T V F     + + TG  DN  K+W
Sbjct:  301 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ-EEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH-IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIW 476          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP17_MOUSE (Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC---PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY--QITAVSFSDASE*IYTGGIDNDVKVWD 685
            I + +GH   V  +++ P +G ++ S S D  I LW V+GD +      GH  A+ D+ + T G+Q +SA+ D+ L+ WD ETG+ I +    N  V  C    P      L V+G  D     WD+R    +Q + D++   +  + F D +    +   D  ++VW+
Sbjct:  281 IHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFT--NRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEY-DRHLGAVNTIVFVDENRRFVSTSDDKSLRVWE 446          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 50/190 (26.32%), Postives = 90/190 (47.37%), Query Frame = 2
Query:   80 ENALSTVSARPMEWSTVPYSAPQ----APGPNGKQRTSSLESP--IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI-QTFPDKYQITAVSF 625
            +N + ++S       +V +++ +    A   +G  +   LE    +  LTGH++++  M  +P G  +ASGS D ++ LW V    C      KGH + +  + ++ DG  +++AS D T++ WD+  GK  ++   H   V           L+ SGS D T + WD+     +  T P    + ++SF
Sbjct:   49 QNCIISLSGHTSPVDSVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGC--IYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTG-IEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISF 235          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR88_HUMAN (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 56/169 (33.14%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  194 PIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWH-VHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQRGAIQTFPDKY--QITAVSFSDASE*IYTGGIDNDVKVWDL 688
            P  +L+GH+ AV T       T + SGS+D  + LW  V G        +  K  +++   T D S++I+AS DKT+RAWD+ETGK + K+  +++F+ SC  S  G   VVSG D D    + D      +    D +   IT+  F   S+ + +  +D  +K+WD+
Sbjct:   94 PFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDFEHRP-KAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLLWKV-RYDTFIVSCKFSPDG-KYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDV 259          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 49/172 (28.49%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  179 SSLESPIM--LLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM-RQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWD 685
            S LE PI+     GH++A+ +   +P    IA+ S D  + LW +    + +  + GHK+ +  L ++  G+ + SAS D+T+R W ++   +  +   H + V S   S  G  L+V+ S+D + K+W M RQR     +   + +    FS     I +   D  +K+WD
Sbjct:    3 SGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYV-GHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADG-QLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
NUDF_ASPFU1.864e-1329.69Nuclear distribution protein nudF homolog OS=Asper... [more]
YQ95_SCHPO2.434e-1330.26Uncharacterized WD repeat-containing protein C18.0... [more]
WDR48_XENTR2.434e-1329.82WD repeat-containing protein 48 OS=Xenopus tropica... [more]
WDR31_MOUSE2.434e-1328.57WD repeat-containing protein 31 OS=Mus musculus GN... [more]
TUP11_SCHPO2.434e-1326.94Transcriptional repressor tup11 OS=Schizosaccharom... [more]
PRP4_MOUSE2.434e-1328.65U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus ... [more]
PRP17_MOUSE3.179e-1329.59Pre-mRNA-processing factor 17 OS=Mus musculus GN=C... [more]
KTNB1_STRPU3.179e-1326.32Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
WDR88_HUMAN4.152e-1333.14WD repeat-containing protein 88 OS=Homo sapiens GN... [more]
WD51B_MOUSE4.152e-1328.49WD repeat-containing protein 51B OS=Mus musculus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
back to top