FC929858
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13 Identity = 51/178 (28.65%), Postives = 83/178 (46.63%), Query Frame = 2 Query: 161 NGKQRTSSLES--PIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA-SE*IYTGGIDNDVKVW 682 +G + SL+S P+ + GH V + +P+G + + +DR LW + + + +GH + D+ + DGS + D R WD+ TG+ I + H + S G + +GS D T K+WD+RQR + T P + +T V F + TG DN K+W Sbjct: 301 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ-EEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH-IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 476
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13 Identity = 51/178 (28.65%), Postives = 83/178 (46.63%), Query Frame = 2 Query: 161 NGKQRTSSLES--PIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA-SE*IYTGGIDNDVKVW 682 +G + SL+S P+ + GH V + +P+G + + +DR LW + + + +GH + D+ + DGS + D R WD+ TG+ I + H + S G + +GS D T K+WD+RQR + T P + +T V F + TG DN K+W Sbjct: 301 DGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQ-EEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH-IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 476
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: NLE1_ARATH (Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13 Identity = 50/175 (28.57%), Postives = 84/175 (48.00%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK-QIKKMAEHNSF--------VNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 + GH AV + +P G +ASGS D + LW ++ + F KGHKN +L + W+ DG ++S S + W+ + G+ + + H + V+ P RR V+ S DG A++WD+ ++ I +T V + IYTG D +K+W+ +G+ Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRR----FVTSSKDGDARIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGK 273 HSP 2 Score: 69.3218 bits (168), Expect = 2.278e-11 Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 2 Query: 263 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVW 682 + SGS D +FLW + L GH+ + ++++ DG I SAS DK++R W+ TG+ + H V S L++SGS D T K+W++R + Q P ++ AV +S E + +GG D +K+W Sbjct: 332 LVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSR-LLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471 HSP 3 Score: 67.781 bits (164), Expect = 6.629e-11 Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 2 Query: 188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 559 + P LTGHQ V + +P G IAS S D+ + LW+ G F+ V +GH + + W+ D ++S S D TL+ W++ T K + + H V + S G VVSG D KLW Sbjct: 350 KQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWN--GITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEK-VVSGGKDRVLKLW 471
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13 Identity = 43/141 (30.50%), Postives = 71/141 (50.35%), Query Frame = 2 Query: 212 GHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT--TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS 628 GH S V ++ ++P + SGS D+ I +W++ G+CK + GH + + + ++ D +SA DK ++ WD+ET H +V++ S G L SG DGT LWD+ + + + K I A+ FS Sbjct: 103 GHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDG-SLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFS 242 HSP 2 Score: 74.3294 bits (181), Expect = 7.082e-13 Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGT-VIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLVVSGSDDGTAKLWDM--RQRGAIQTFPDKYQITAVSFSDASE*I--YTGGIDNDVKVWDL 688 L GH V ++ P ++ SGS D+ I LW++ D N+ V L GH + + D + D +SAS DKT+R WD+E G+ + H S V S P R VVSGS D T K+W++ + I ++ V FS + + + G D VKVWDL Sbjct: 11 LEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQRRLTGHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNR---QVVSGSRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDL 179
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBLP_DICDI (Guanine nucleotide-binding protein subunit beta-like protein OS=Dictyostelium discoideum GN=gpbB PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13 Identity = 52/177 (29.38%), Postives = 83/177 (46.89%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGT-VIASGSHDRDIFLWHVH-----GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD-MRQRGAIQTFPDKYQ--ITAVSFSDASE*IYTGGIDNDVKVWDLRKGESKH 709 L GH V ++ V+P I S S D+ + +W + K LKGH + + D+ + DG +S S D TLR WD+ G + H V S S ++SGS D T K+W+ + + P+ +Q ++ + FS + I +G DN VK+WD++ + H Sbjct: 17 LVGHNGFVTSIAVSPENPDTIISSSRDKTVMVWQLTPTDATSPGKAHRSLKGHSHFVQDVVISHDGQFALSGSWDNTLRLWDITKGVSTRLFKGHTQDVMSVAFSSDNRQ-IISGSRDATIKVWNTLGECKFTLEGPEAHQDWVSCIRFSPNTPTIVSGSWDNKVKIWDIKSFKCNH 192
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: YN55_SCHPO (Uncharacterized WD repeat-containing protein C713.05 OS=Schizosaccharomyces pombe GN=SPBC713.05 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13 Identity = 51/174 (29.31%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 185 LESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR--GAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697 LE+ L + + + +K N G + + ++R + LW+V G C + GH + ILDL D ++ S DK ++ WDV TGK +++ H + +N+ ++ SGS D +LWD R IQ D + + S A I TG D ++ +D+RKG Sbjct: 3 LEAKTKLSSKAKEPINVVKYNRTGKYVLAAGNERVVRLWNVKSGACIHEYA--GHGHEILDLDLVYDSTKFASCGGDKFIQVWDVNTGKVDRRLGGHLAQINT-IRYNEDSSILASGSFDSKVRLWDCRSNSFSPIQVLADA-KDSVSSIDIAEHLIVTGSTDGTLRTYDIRKG 172
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP46_CRYNE (Pre-mRNA-splicing factor PRP46 OS=Cryptococcus neoformans GN=PRP46 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13 Identity = 64/242 (26.45%), Postives = 106/242 (43.80%), Query Frame = 2 Query: 47 NMEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIM--------------------LLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL--VVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 N++++ + + ST A S V + + G Q TS L +M +++GH V + ++P A+G+ DR I +W + G+ K + L GH + I L + + S + DK ++ WD+ET K I+ H S V S P L +V+G D + ++WDMR R I T + V D+ I +G +D+ V++WDL G+ Sbjct: 105 NVKLIGGPEAEKASSSTPQAVAEPRSLVKFRHQEGFAAEGGQATSRLSQALMRKKEAREVKPEYHPEWKLTRVISGHMGWVRAVAMDPGNQWFATGAGDRVIKIWDLASGELK--LSLTGHISTIRGLAVSDRHPYLFSCAEDKMVKCWDLETNKVIRHYHGHFSGVYSLSVH---PTLDVLVTGGRDASVRVWDMRTRANIFTLTGHTSTVGDVKTQDSDPQIISGSMDSTVRLWDLAAGK 341 HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11 Identity = 39/162 (24.07%), Postives = 67/162 (41.36%), Query Frame = 2 Query: 212 GHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697 GH S VY++ V+P V+ +G D + +W + N L GH + + D+ QIIS S D T+R WD+ GK + + H V + + S K W + + F I ++ +++G + + +WD + G Sbjct: 264 GHFSGVYSLSVHPTLDVLVTGGRDASVRVWDMRTRA-NIFTLTGHTSTVGDVKTQDSDPQIISGSMDSTVRLWDLAAGKCMNTLTHHKKSVRALAIHPTEYSFASASSGGNNIKKWKCPEGIFVNNFVGHEAIINTLSINSENVLFSGADNGTLTLWDYKTG 424
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13 Identity = 48/167 (28.74%), Postives = 88/167 (52.69%), Query Frame = 2 Query: 218 QSAVYTMKVNPAGTVIASGSHDR-DIFLWHVHGDCKNFMVLK--GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDASE*IYTGGIDN-DVKVWDLRKGE 700 QS + T+ VN G IA GS + +W + VLK H +A+ L +++DG +II+ + D ++ WD+ +G I +H S V+ C S+RG ++ S S DG+ + WD+ + +TF P + Q + ++ + E + G D+ ++ +W ++ G+ Sbjct: 296 QSNIDTLTVNSTGDWIAIGSSKLGQLLVWEWQSES---YVLKQQSHYDALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRG-NVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDPSGEIVCAGSQDSFEIFMWSVQTGQ 458
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP4_YEAST (U4/U6 small nuclear ribonucleoprotein PRP4 OS=Saccharomyces cerevisiae GN=PRP4 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13 Identity = 47/164 (28.66%), Postives = 79/164 (48.17%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR--GAI-QTFPDKYQITAVSFS--DASE*IYTGGIDNDVKVW 682 L GH+ + +K +P+G I S SHD LW + ++ +GH + L + DGS + S D WD+ +G ++ +A H+ + + S G V +G DG +WD+R+R G + Q + +T V FS D + + + G DN + V+ Sbjct: 261 LVGHERRISDVKYHPSGKFIGSASHDMTWRLWDASTH-QELLLQEGHDKGVFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQ-VATGGGDGIINVWDIRKRDEGQLNQILAHRNIVTQVRFSKEDGGKKLVSCGYDNLINVY 422
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13 Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 2 Query: 83 NALSTVSARPMEWSTVPYSAPQ----APGPNGKQRTSSLESPIMLLT--GHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 571 N + +++ +V + P+ A +G R LE+ +L T GH++ + ++ +P G +ASGS D +I LW + F +GH A+ L ++ DG + SA+ D T++ WD+ GK + + H VN L+ SGS D T + WD+ + Sbjct: 54 NCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY-RGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFWDLEK 220 HSP 2 Score: 73.9442 bits (180), Expect = 9.250e-13 Identity = 50/167 (29.94%), Postives = 74/167 (44.31%), Query Frame = 2 Query: 197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVWDLRK 694 IM LTGH S V ++++N +I +GS I +W + K L GHK I L + G + S S D ++ WD+ + + H+ V S G L S +DD T KLWD+ + FP + V F + +G D ++ WDL K Sbjct: 56 IMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA-AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLA-SAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220 HSP 3 Score: 72.0182 bits (175), Expect = 3.515e-12 Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPA-GTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 + H S V ++ + A G ++A+G D + LW ++ +C M L GH + + + T I++ S ++R WD+E K ++ + H + + S G V SGS D KLWD+R++G + + Q + + FS + + + D+ VK+WDL G+ Sbjct: 16 IVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNC--IMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGE-FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK 180 The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 244
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bpback to top |