FC929858
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12 Identity = 45/166 (27.11%), Postives = 77/166 (46.39%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697 L GH VY P ++ S S D I LW + C + +GH + D+ + G +S S DKT R W ++ + ++ H S V+ C V +GS D T +LWD +++ K +++++FS + +G +D+++ +WDL G Sbjct: 446 LMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSC--VVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVD-CVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNG 608 HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 45/169 (26.63%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 191 SPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRK 694 S ++ GH V+ ++ P G S S+D+ LW + + V GH + + + + + + + + S D+T+R WD TG+ ++ M H V+S S G L SGS D +WD+ + T +T ++FS + G+DN++ +WD K Sbjct: 483 SCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSN-QALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLA-SGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWDFHK 649
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR37_HUMAN (WD repeat-containing protein 37 OS=Homo sapiens GN=WDR37 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12 Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 2 Query: 305 VHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703 V DC V LK H+ ++ W G Q ++AS D+T +DVET + + + H+ + CC P++R LVV+ S D T +LWD R ++ F + + + +G D VKVWDL+ S Sbjct: 263 VSSDCPTIRVPLTSLKSHQGVVIASDWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQR---LVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRS 400
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12 Identity = 47/170 (27.65%), Postives = 78/170 (45.88%), Query Frame = 2 Query: 197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703 I +L H+ + +P +A+ S DR LW G +GH + + + + G + + S DKT R WD+ TG ++ H+ V + G L S D A++WD+R +I F + + +V+FS + +GG DN ++WDLR +S Sbjct: 291 IAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTL--LQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDG-ALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS 457
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 209 TGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 565 TGH ++Y + +P G + A+ D+ + +W + G+ LKGH++++ + ++ DG + S S D+T+R W +GK + + H V+ S G L VS DG +LWD+ Sbjct: 598 TGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLDGNL--LQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTL-VSVCRDGQIRLWDL 713 HSP 2 Score: 71.2478 bits (173), Expect = 5.996e-12 Identity = 48/165 (29.09%), Postives = 85/165 (51.52%), Query Frame = 2 Query: 197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVW 682 + L GHQ +VY++ +P G ++AS S DR + LWH K VL GH ++ D ++ DG ++S D +R WD++ G I++ + E F + P+ L+ +DDGT +LW + + A + D++ +T V F+ + +++ + V W Sbjct: 635 LQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSG-KTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLD-GNLIRQFGLPEVAFFGVNWHPNGN---LLAVAADDGTVRLWTPQGEIKATLSGHDEF-VTRVVFTPDGKQLFSSSSNGSVIHW 793
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: UTP15_CHICK (U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus GN=UTP15 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 42/170 (24.71%), Postives = 79/170 (46.47%), Query Frame = 2 Query: 188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697 + PI + + A Y G ++ +GS + I L+ + G GH A+ + + +D +I S D + WD+ + +I +EH+ +V C S+ + ++GS D T K++D R + ++ T + + +V + + + G VKVWD+ KG Sbjct: 70 QEPIKTFSRFKDAAYCATYRDDGKLLVAGSEEGSIRLFDISGRAP-LRQFDGHTKAVHVVGFLSDKYRIFSGGDDYSSSLWDIPSATEIVSYSEHSDYVRCGCASKLNGDVFITGSYDHTVKVFDARTKSSVMTIEHGHPVESVLLFPSGGLLVSAG-GRYVKVWDVLKG 237
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 2 Query: 179 SSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 559 SS + +L GH+ V+ NP +ASGS DR I +W+V + L+GH AIL L + + G+Q++SA+ D ++ W + +G+ + + H V + SR L+VSG D +W Sbjct: 494 SSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQ-QCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDNHEDRVWALA-SRFDGSLLVSGGADAVVSVW 618 HSP 2 Score: 69.707 bits (169), Expect = 1.744e-11 Identity = 42/172 (24.42%), Postives = 84/172 (48.84%), Query Frame = 2 Query: 197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS--PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDA---SE*IYTGGIDNDVKVWDLRKG 697 I + H++ V TM ++P T++A+G + + +W + G +GH I L + + + AS D +R WD+ + + + H+S + G ++SGS D T ++W++++R A++T P + + A+ + + + +YT G N + WD + G Sbjct: 96 IKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDIAGAYVTHS-FRGHGGVISALCFGKHQNTWVLASGADDSRVRLWDLNSSRSMAVFEGHSSVIRGLTFEPTGS-FLLSGSRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWVNGQPEEKILYTAGEGNLILAWDWKSG 265
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 245 NPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-TFPD--KYQITAVSFSDASE*IYTGGIDNDVKVWDL 688 +P G +A+G+ D+ I +W + +N GH+ I L ++ DG I S S D+T+R WD+ETG+ ++ E + P ++ V +GS D + ++WDMR A + PD K + +V+FS + +G +D +K+W+L Sbjct: 353 SPDGKYLATGAEDKLIRVWDIQSRTIRN--TFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQ---FVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSPDGRNLVSGSLDKTIKMWEL 500
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP46_YARLI (Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolytica GN=PRP46 PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 48/168 (28.57%), Postives = 79/168 (47.02%), Query Frame = 2 Query: 203 LLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703 ++TGHQ V ++ V P A+GS D+ I +W + K + L GH + L + + S DK ++ WD+ET K ++ H S V S ++VS D A++WD+R R + K I V F + + T D V++W+L+ G++ Sbjct: 127 VITGHQGWVRSVCVEPENQWFATGSADKTIKIWDL-ATGKLRLTLTGHIMGVRALGVSPRHPYMFSGGEDKMVKCWDLETNKVVRHYHGHLSAVYS-LDIHPTLDVLVSAGRDAVARVWDIRTRDPVVVLSGHKSTINRVKFQASEPQVITASADETVRLWNLQAGKT 292
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 44/159 (27.67%), Postives = 72/159 (45.28%), Query Frame = 2 Query: 215 HQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT-TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVW 682 H + + V+P I S S D I LW N V +GH + ++ + W D +Q +AS DKT++ W + + + H +NS G P ++SG+DD K+WD + + +QT ++ V + I +G D VK+W Sbjct: 99 HADYIRCIIVHPTLPYILSSSDDMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQSKTCVQTLEGHSNNVSVVCYHPELPLILSGSEDGTVKLW 257
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: APAF_MOUSE (Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 2 Query: 200 MLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706 +++ H AVY + G IAS D+ + ++ K + +K H++ +L +++D S I + S DK ++ WD TGK + EH+ VN C + L+ +GS+D KLWD+ Q+ T F + FS E + + D +++WD+R + Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778 The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 244
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bpback to top |