FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 45/166 (27.11%), Postives = 77/166 (46.39%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            L GH   VY     P   ++ S S D  I LW +    C   +  +GH   + D+ +   G   +S S DKT R W  ++ + ++    H S V+ C         V +GS D T +LWD     +++     K  +++++FS     + +G +D+++ +WDL  G
Sbjct:  446 LMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSC--VVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVD-CVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNG 608          

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 45/169 (26.63%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  191 SPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            S ++   GH   V+ ++  P G    S S+D+   LW    + +   V  GH + +  + +  + + + + S D+T+R WD  TG+ ++ M  H   V+S   S  G  L  SGS D    +WD+     + T       +T ++FS     +   G+DN++ +WD  K
Sbjct:  483 SCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSN-QALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLA-SGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWDFHK 649          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR37_HUMAN (WD repeat-containing protein 37 OS=Homo sapiens GN=WDR37 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 2
Query:  305 VHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703
            V  DC    V    LK H+  ++   W   G Q ++AS D+T   +DVET + +  +  H+  +  CC  P++R   LVV+ S D T +LWD R     ++  F         +     + + +G  D  VKVWDL+   S
Sbjct:  263 VSSDCPTIRVPLTSLKSHQGVVIASDWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQR---LVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRS 400          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 47/170 (27.65%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703
            I +L  H+     +  +P    +A+ S DR   LW   G        +GH + +  + +   G  + + S DKT R WD+ TG ++     H+  V      + G  L  S   D  A++WD+R   +I  F    + + +V+FS     + +GG DN  ++WDLR  +S
Sbjct:  291 IAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTL--LQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDG-ALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS 457          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  209 TGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 565
            TGH  ++Y +  +P G + A+   D+ + +W + G+      LKGH++++  + ++ DG  + S S D+T+R W   +GK +  +  H   V+    S  G  L VS   DG  +LWD+
Sbjct:  598 TGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLDGNL--LQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTL-VSVCRDGQIRLWDL 713          

HSP 2 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 48/165 (29.09%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVW 682
            +  L GHQ +VY++  +P G ++AS S DR + LWH     K   VL GH  ++ D  ++ DG  ++S   D  +R WD++ G  I++  + E   F  +  P+     L+   +DDGT +LW  + +  A  +  D++ +T V F+   + +++   +  V  W
Sbjct:  635 LQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSG-KTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLD-GNLIRQFGLPEVAFFGVNWHPNGN---LLAVAADDGTVRLWTPQGEIKATLSGHDEF-VTRVVFTPDGKQLFSSSSNGSVIHW 793          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: UTP15_CHICK (U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus GN=UTP15 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 42/170 (24.71%), Postives = 79/170 (46.47%), Query Frame = 2
Query:  188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            + PI   +  + A Y       G ++ +GS +  I L+ + G         GH  A+  + + +D  +I S   D +   WD+ +  +I   +EH+ +V   C S+    + ++GS D T K++D R + ++ T    + + +V    +   + + G    VKVWD+ KG
Sbjct:   70 QEPIKTFSRFKDAAYCATYRDDGKLLVAGSEEGSIRLFDISGRAP-LRQFDGHTKAVHVVGFLSDKYRIFSGGDDYSSSLWDIPSATEIVSYSEHSDYVRCGCASKLNGDVFITGSYDHTVKVFDARTKSSVMTIEHGHPVESVLLFPSGGLLVSAG-GRYVKVWDVLKG 237          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  179 SSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 559
            SS    + +L GH+  V+    NP    +ASGS DR I +W+V    +    L+GH  AIL L + + G+Q++SA+ D  ++ W + +G+ +  +  H   V +   SR    L+VSG  D    +W
Sbjct:  494 SSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQ-QCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDNHEDRVWALA-SRFDGSLLVSGGADAVVSVW 618          

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 42/172 (24.42%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS--PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDA---SE*IYTGGIDNDVKVWDLRKG 697
            I  +  H++ V TM ++P  T++A+G  +  + +W + G        +GH   I  L +    +  + AS   D  +R WD+ + + +     H+S +        G   ++SGS D T ++W++++R A++T P  + + A+ + +     + +YT G  N +  WD + G
Sbjct:   96 IKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDIAGAYVTHS-FRGHGGVISALCFGKHQNTWVLASGADDSRVRLWDLNSSRSMAVFEGHSSVIRGLTFEPTGS-FLLSGSRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWVNGQPEEKILYTAGEGNLILAWDWKSG 265          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  245 NPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-TFPD--KYQITAVSFSDASE*IYTGGIDNDVKVWDL 688
            +P G  +A+G+ D+ I +W +     +N     GH+  I  L ++ DG  I S S D+T+R WD+ETG+    ++ E      +  P ++    V +GS D + ++WDMR   A +   PD  K  + +V+FS     + +G +D  +K+W+L
Sbjct:  353 SPDGKYLATGAEDKLIRVWDIQSRTIRN--TFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQ---FVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSPDGRNLVSGSLDKTIKMWEL 500          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP46_YARLI (Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolytica GN=PRP46 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 48/168 (28.57%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  203 LLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703
            ++TGHQ  V ++ V P     A+GS D+ I +W +    K  + L GH   +  L  +     + S   DK ++ WD+ET K ++    H S V S         ++VS   D  A++WD+R R  +      K  I  V F  +   + T   D  V++W+L+ G++
Sbjct:  127 VITGHQGWVRSVCVEPENQWFATGSADKTIKIWDL-ATGKLRLTLTGHIMGVRALGVSPRHPYMFSGGEDKMVKCWDLETNKVVRHYHGHLSAVYS-LDIHPTLDVLVSAGRDAVARVWDIRTRDPVVVLSGHKSTINRVKFQASEPQVITASADETVRLWNLQAGKT 292          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 44/159 (27.67%), Postives = 72/159 (45.28%), Query Frame = 2
Query:  215 HQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT-TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVW 682
            H   +  + V+P    I S S D  I LW       N  V +GH + ++ + W   D +Q  +AS DKT++ W + +      +  H   +NS      G  P ++SG+DD   K+WD + +  +QT       ++ V +      I +G  D  VK+W
Sbjct:   99 HADYIRCIIVHPTLPYILSSSDDMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQSKTCVQTLEGHSNNVSVVCYHPELPLILSGSEDGTVKLW 257          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: APAF_MOUSE (Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  200 MLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            +++  H  AVY    +  G  IAS   D+ + ++      K  + +K H++ +L   +++D S I + S DK ++ WD  TGK +    EH+  VN C   +     L+ +GS+D   KLWD+ Q+    T F     +    FS   E + +   D  +++WD+R    +
Sbjct:  609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
TAF5_DROME2.691e-1227.11Transcription initiation factor TFIID subunit 5 OS... [more]
WDR37_HUMAN3.515e-1230.50WD repeat-containing protein 37 OS=Homo sapiens GN... [more]
PRP4_ARATH3.515e-1227.65U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
Y143_SYNY34.591e-1230.25Uncharacterized WD repeat-containing protein slr01... [more]
UTP15_CHICK4.591e-1224.71U3 small nucleolar RNA-associated protein 15 homol... [more]
UTP13_SCHPO4.591e-1232.28Probable U3 small nucleolar RNA-associated protein... [more]
RCO1_NEUCR4.591e-1230.72Transcriptional repressor rco-1 OS=Neurospora cras... [more]
PRP46_YARLI4.591e-1228.57Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolyt... [more]
COPB2_DICDI4.591e-1227.67Coatomer subunit beta' OS=Dictyostelium discoideum... [more]
APAF_MOUSE4.591e-1227.49Apoptotic protease-activating factor 1 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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