FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR37_XENTR (WD repeat-containing protein 37 OS=Xenopus tropicalis GN=wdr37 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 50/207 (24.15%), Postives = 81/207 (39.13%), Query Frame = 2
Query:  212 GHQSAVYTMKVNPAGTVIASGSHDRDIFLWH-----------------------------------VHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703
            GH  +V ++K +P   +  + S D+   +W                                       DC    V    LK H+  ++   W   G Q ++AS D+T   +DVET + +  +  H+  +  CC  P++R   LVV+ S D T +LWD R     ++  F         +     + + +G  D  VKVWDL+   S
Sbjct:  197 GHAGSVNSIKFHPTEQIALTASGDQTAHIWRYMVQLPTPQPTADTSISGEEEVDFSDKDENDGDGDASSDCPTVRVPLTALKSHQGVVIAADWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQR---LVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRS 400          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: TIPD_DICDI (Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 50/180 (27.78%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  209 TGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEH------NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGG---------IDNDVKVWDLRKGE 700
            TGH S +Y M  N  G ++A+G  D+ + +W V  G  K+   L G   +I+ + ++ +   I+  S D + R W+ E G+    +  H        F+NS          VV+GS D T KLWD+++    +T           FS  ++ +  GG         +D+ V+ WD   GE
Sbjct:  321 TGHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKS--TLLGASQSIVSVSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKFINS--------NRVVTGSHDRTIKLWDLQKGYCTRTI--------FCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGE 482          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: SMU1_DICDI (WD40 repeat-containing protein smu1 OS=Dictyostelium discoideum GN=smu1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 42/139 (30.22%), Postives = 66/139 (47.48%), Query Frame = 2
Query:  215 HQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS 628
            H  A+  +  +  G  +A+GS D  I +W +  G C        H N +  L ++ + +QI+S S D +L+   +++GK +K    H SFVN CC        V+S S DG  K+WD +    +QT      +T    S
Sbjct:  274 HDDAILCIAFSKDGEFLATGSLDNKIKVWQIKSGKCLRKFE-PAHTNGVTCLQFSRNSTQILSGSFDSSLKIHGLKSGKALKIFRGHQSFVNDCC-FNHDEDRVISCSSDGKIKIWDAKSSDCLQTITPTSVVTVRDIS 410          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_DROVI (WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/162 (26.54%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDL 688
            LTG + ++Y++ +NP+GTVI SGS +  + +W     C   M L+GH   +  L  + DG+Q++S S D T++ W++   + I+ +  H   V S   S      ++SGS D    + +MR     +    +K  + ++ ++     ++    ++D++ W L
Sbjct:  162 LTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPR-TCMRSMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCIQTIHVHKEGVWSLLMSENF-QYIISGSRDRNIIVTEMRNPSNKMLVCEEKAPVLSLGYNIDKTGVWATTWNSDIRCWKL 321          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 52/176 (29.55%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            L  H+  V  +        +AS   D+ IFLW V+         +      L G K++I  L     G+ I+S S +  LR WD  T  +  K+  H   V     S  G   VVSGS DGT K+W++ Q+  IQT    K  + ++  S+  + I +G  D ++ V ++R   +K
Sbjct:  111 LRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRSMKLRGHTENVRCLVVSPDGNQ-VVSGSSDGTIKVWNLGQQRCIQTIHVHKEGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNK 285          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_DROSI (WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 52/176 (29.55%), Postives = 81/176 (46.02%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            L  H+  V  +        +AS   D+ IFLW V+         +      L G K++I  L     G+ I+S S +  LR WD  T  +I K+  H   V     S  G   VVSGS DGT K+W++ Q+  +QT    K  + ++  S+  + I +G  D ++ V ++R   +K
Sbjct:  111 LRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLRGHTENVRCLVVSPDGNQ-VVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNK 285          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 41/162 (25.31%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDL 688
            LTG + ++Y++ +NP+GTVI SGS +  + +W     C   M L+GH   +  L  + DG+Q++S S D T++ W++   + ++ +  H   V S   S      ++SGS D    + +MR          ++  + ++ ++     ++    ++D++ W L
Sbjct:  162 LTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPR-TCMRIMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVWSLLMSENF-QYIISGSRDRNIIVTEMRNPSNKTLVCEEQAPVLSLGYNIDKTGVWATTWNSDIRCWKL 321          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_DROSE (WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 52/176 (29.55%), Postives = 81/176 (46.02%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            L  H+  V  +        +AS   D+ IFLW V+         +      L G K++I  L     G+ I+S S +  LR WD  T  +I K+  H   V     S  G   VVSGS DGT K+W++ Q+  +QT    K  + ++  S+  + I +G  D ++ V ++R   +K
Sbjct:  111 LRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLRGHTENVRCLVVSPDGNQ-VVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNK 285          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 41/162 (25.31%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDL 688
            LTG + ++Y++ +NP+GTVI SGS +  + +W     C   M L+GH   +  L  + DG+Q++S S D T++ W++   + ++ +  H   V S   S      ++SGS D    + +MR          ++  + ++ ++     ++    ++D++ W L
Sbjct:  162 LTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPR-TCMRIMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVWSLLMSENF-QYIISGSRDRNIIVTEMRNPSNKTLVCEEQAPVLSLGYNIDKTGVWATTWNSDIRCWKL 321          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/162 (26.54%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDL 688
            LTG + ++Y++ +NP+GTVI SGS +  + +W     C   M L+GH   +  L  + DG+Q++S S D T++ W++   + I+ +  H   V S   S      ++SGS D    + +MR     +    +K  + ++ ++     ++    ++D++ W L
Sbjct:  162 LTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPR-TCMRSMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCIQTIHVHKEGVWSLLMSENF-QYIISGSRDRNIIVTEMRNPSNKMLVCEEKAPVLSLGYNIDKTGVWATTWNSDIRCWKL 321          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 52/176 (29.55%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            L  H+  V  +        +AS   D+ IFLW V+         +      L G K++I  L     G+ I+S S +  LR WD  T  +  K+  H   V     S  G   VVSGS DGT K+W++ Q+  IQT    K  + ++  S+  + I +G  D ++ V ++R   +K
Sbjct:  111 LRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRSMKLRGHTENVRCLVVSPDGNQ-VVSGSSDGTIKVWNLGQQRCIQTIHVHKEGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNK 285          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR37_XENLA (WD repeat-containing protein 37 OS=Xenopus laevis GN=wdr37 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = 2
Query:  314 DCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGES 703
            DC    V    LK H+  ++   W   G Q ++AS D+T   +DVET + +  +  H+  +  CC  P++R   LVV+ S D T +LWD R     ++  F         +     + + +G  D  VKVWDL+   S
Sbjct:  267 DCPTVRVPLTALKSHQGVVIAADWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQR---LVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRS 401          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: UTP15_XENLA (U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus laevis GN=utp15 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/170 (25.29%), Postives = 76/170 (44.71%), Query Frame = 2
Query:  188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            + P+   +  +   Y       G ++A+G  D  + L+ + G         GH  A+  + +T+D  +I+S S D T + WD+  G +I    EH  ++   C S     L  +GS D T K++D R   ++ +      + +V    +   + + G    VKVWD+ KG
Sbjct:   70 QEPVKTFSRFKDTAYCGTYRGDGKLLAAGCEDSVVQLFDISGKAA-LRQFSGHSKAVHFVDFTSDKYRIVSGSDDYTSKLWDIPNGIEIASYKEHTDYIRCGCTSSLNNDLFATGSYDHTIKVFDGRTDKSVMSMDHGQPVESVLLFPSGGLLVSAG-GRYVKVWDILKG 237          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 48/163 (29.45%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD----KYQITAVSFSDASE*IYTGGIDNDVKVW 682
            L GH+  V +   +P G +IAS S D  I LW V    K   VLKGH+ ++  + ++ D  Q+ S   DK    W+V++G+++  +  H   + S   S     L  +GS D T  +WD+R    + ++ +       I+ + +S AS  + +G  D  + VW
Sbjct:   64 LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDV-ARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSL-ATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYS-ASGLLASGSWDKTICVW 223          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
WDR37_XENTR5.996e-1224.15WD repeat-containing protein 37 OS=Xenopus tropica... [more]
TIPD_DICDI5.996e-1227.78Protein tipD OS=Dictyostelium discoideum GN=tipD P... [more]
SMU1_DICDI5.996e-1230.22WD40 repeat-containing protein smu1 OS=Dictyosteli... [more]
WDR48_DROVI7.830e-1226.54WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSI7.830e-1229.55WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSE7.830e-1229.55WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROMO7.830e-1226.54WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR37_XENLA7.830e-1230.43WD repeat-containing protein 37 OS=Xenopus laevis ... [more]
UTP15_XENLA7.830e-1225.29U3 small nucleolar RNA-associated protein 15 homol... [more]
WDR38_MOUSE1.023e-1129.45WD repeat-containing protein 38 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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