FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_CULQU (WD repeat-containing protein 48 homolog OS=Culex quinquefasciatus GN=CpipJ_CPIJ014111 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 51/171 (29.82%), Postives = 77/171 (45.03%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +        +AS   D+ IFLW V+         +      + G K++I  L     G+ I+S S + TLR WD  T  +I K+  H   V +   S  G   VVSGS DG  KLW + Q+  IQT     + + A+  +D    + +G  D  + + +LR
Sbjct:   99 LRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSITGSKDSIYSLAMNPSGTIIVSGSTENTLRIWDPRTCNKIAKLKGHTENVKALVVSEDGTQ-VVSGSSDGKIKLWSIGQQRCIQTISVHSEGVWALLMTDNFSHVISGSRDKKIVMTELR 268          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: NUDFB_NEUCR (Nuclear distribution protein pac-1b OS=Neurospora crassa GN=pac-1b PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNP--AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ--------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 565
            + GH  AV  +       GT++AS S D  I LW    + KN   L GH + +  + +   G+         ++SAS D +L+ WDV TG  +K +  H  +  + CPS  G  L+ +GSD  + +LWD+
Sbjct:  162 IKGHTKAVLDVDFGGPRGGTLLASCSSDLTIKLWDPSDEYKNIRTLPGHDHIVSSVRFIPSGAAGAPASGNLLVSASKDNSLKIWDVTTGYCVKTILGHVDWPRAVCPSHDGRYLLSTGSDK-SVRLWDL 290          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_CAEEL (Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 46/181 (25.41%), Postives = 79/181 (43.65%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFS---------------DASE*IYTGGIDNDVKVWDLRKGE 700
            L GH  AV  + ++ AG  + S S D  I LW           LKGH++ +  + +   G  ++SAS D T++ WD+ TG  +     HN +V     S  G  L  S S D T  +W    + A     D ++ +  V ++               +++  +++G  D  +K W++  G+
Sbjct:  144 LKGHTDAVNDIAIDAAGKQLVSCSSDLSIKLWDFGQTYDCLKSLKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDISTGYCVYTFRGHNDWVRMIRISNDG-TLFASASLDQTVTVWSFATKSAKLVLRDHEHAVECVEWAPDTAYTNVTGQQPEGNSTHILFSGSRDRSIKAWNINTGD 323          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 55/170 (32.35%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPA-GTVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ--RGAIQTFPDKYQITAVSFS--DASE*IYTGGIDNDVKVWDL 688
            L GH   V  +   P    +I S S D+ I +W +  D  N+ +    L+GH + + D+  ++DG   +S S D TLR WD+ TG   ++   H   V S   S      +VSGS D T KLW+     +  IQ       ++ V FS   ++  I + G D  VKVW+L
Sbjct:   11 LKGHSGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSADNRQ-IVSGSRDKTIKLWNTLGVCKYTIQDDSHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNL 179          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_DROGR (WD repeat-containing protein 48 homolog OS=Drosophila grimshawi GN=GH21936 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 42/162 (25.93%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDL 688
            LTG + ++Y++ +NP+GTVI SGS +  + +W     C   M L+GH   +  L  + DG+Q++S S D T++ W++   + I+ +  H   V S   S      ++SGS D    + ++R     +    +K  + ++ ++     ++    ++D++ W L
Sbjct:  162 LTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPR-TCMRSMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCIQTIHVHKEGVWSLLMSENF-QYIISGSRDRNIIVTEIRNPSNKMLVCEEKAPVLSLGYNIDKTGVWATTWNSDIRCWKL 321          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 52/176 (29.55%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            L  H+  V  +        +AS   D+ IFLW V+         +      L G K++I  L     G+ I+S S +  LR WD  T  +  K+  H   V     S  G   VVSGS DGT K+W++ Q+  IQT    K  + ++  S+  + I +G  D ++ V ++R   +K
Sbjct:  111 LRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRSMKLRGHTENVRCLVVSPDGNQ-VVSGSSDGTIKVWNLGQQRCIQTIHVHKEGVWSLLMSENFQYIISGSRDRNIIVTEIRNPSNK 285          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR12_DANRE (Ribosome biogenesis protein wdr12 OS=Danio rerio GN=wdr12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 62/223 (27.80%), Postives = 90/223 (40.36%), Query Frame = 2
Query:  155 GPNGKQRTSSLESPIML---------------LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKN------------------------FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA----IQTFPDKYQITAVSFSDASE-*IYTGGIDNDVKVWDLR 691
            G N    T+SL+  +ML                 GH  +V T+ V+P  T   SGS D+ + +W      +                          M L GH  A+  + W  D  ++ SAS D T+R WD ETG Q  K     S V +C         + SGS D   +LWD R +      +        +TAV ++ + E  + +G +DN VK+WD R
Sbjct:  153 GLNSVLLTASLDQTVMLWEWNSERNKVKARHCCRGHAGSVDTIAVDPTRTKFCSGSWDKMLKIWSAVPTEEEDEIEEPNRPRKKQKTEQMGLTRTPLMTLSGHNEAVSSVLWM-DADELCSASWDHTIRLWDAETGGQ--KSTLSGSKVFNCISYSPLCRRLASGSTDRHVRLWDPRSKDGSLVLLSLTSHNGWVTAVRWAPSHEHQLVSGSLDNVVKLWDTR 372          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 52/179 (29.05%), Postives = 80/179 (44.69%), Query Frame = 2
Query:  188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGS---------QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            + PI    GH + V  +K +P G ++AS S D  + +W + H  C +   L+ H   I  + W+  G           + SAS D T+R WDV+ G  I  + +H   V S   S  G  L  SGS D    +W+ +    + ++     I  V ++ A + +     D  V V DLRK
Sbjct:  347 DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVH--DLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYL-ASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 522          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 52/179 (29.05%), Postives = 80/179 (44.69%), Query Frame = 2
Query:  188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGS---------QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            + PI    GH + V  +K +P G ++AS S D  + +W + H  C +   L+ H   I  + W+  G           + SAS D T+R WDV+ G  I  + +H   V S   S  G  L  SGS D    +W+ +    + ++     I  V ++ A + +     D  V V DLRK
Sbjct:  344 DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVH--DLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYL-ASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 519          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: SMU1_XENTR (WD40 repeat-containing protein SMU1 OS=Xenopus tropicalis GN=smu1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 2
Query:  224 AVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 592
            AV  M  +    ++A+G+ D  I +W +  G C      + H   +  L ++ D SQI+SAS D+T+R   +++GK +K+   H+SFVN    ++ G   ++S S DGT K+W+M+      TF
Sbjct:  266 AVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFE-RAHSKGVTCLSFSKDCSQILSASFDQTIRVHGLKSGKTLKEFRGHSSFVNEATFTQDG-HYIISASSDGTVKIWNMKTTECSNTF 387          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 54/170 (31.76%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPA-GTVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ--RGAIQTFPDKYQITAVSFS--DASE*IYTGGIDNDVKVWDL 688
            L GH   V  +   P    +I S S D+ I +W +  D  N+ +    L+GH + + D+  ++DG   +S S D TLR WD+ TG   ++   H   V S   S      +VSGS D T KLW+     +  +Q       ++ V FS   ++  I + G D  VKVW+L
Sbjct:   11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
WDR48_CULQU1.744e-1129.82WD repeat-containing protein 48 homolog OS=Culex q... [more]
NUDFB_NEUCR1.744e-1132.31Nuclear distribution protein pac-1b OS=Neurospora ... [more]
LIS1_CAEEL1.744e-1125.41Lissencephaly-1 homolog OS=Caenorhabditis elegans ... [more]
GBLP_DANRE1.744e-1132.35Guanine nucleotide-binding protein subunit beta-2-... [more]
WDR48_DROGR2.278e-1125.93WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR12_DANRE2.278e-1127.80Ribosome biogenesis protein wdr12 OS=Danio rerio G... [more]
TB1RB_XENLA2.278e-1129.05F-box-like/WD repeat-containing protein TBL1XR1-B ... [more]
TB1RA_XENLA2.278e-1129.05F-box-like/WD repeat-containing protein TBL1XR1-A ... [more]
SMU1_XENTR2.278e-1133.06WD40 repeat-containing protein SMU1 OS=Xenopus tro... [more]
GBLP_RAT2.278e-1131.76Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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