FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  182 SLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV-SGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVWDLRK 694
            S E  +  L GH   V ++  +P+  ++ S S D  I +W V  +     V++ H++A+  L     G  ++S+S D+     D++TG+ + K+ +  S  +  C       L+  +G+ D   K+WD+++R  +  FP     IT+++FS+    + T   D+ VK+WDLRK
Sbjct:  252 STEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP-NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRK 423          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/187 (26.74%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WDV TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 49/186 (26.34%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  +V  +  + +G ++AS S D  I LW   G +C     + GH + +  +    +G  I+SAS DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   +++S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/187 (26.74%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WDV TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 48/186 (25.81%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  ++  +  + +G ++AS S D  I LW   G +C     + GH + +  +    +G  I+SAS DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   +++S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/187 (26.74%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WDV TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 48/186 (25.81%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  +V  +  + +G ++AS S D  I LW   G +C     + GH + +  +    +G  I+SA+ DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   +++S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/187 (26.74%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WDV TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 49/186 (26.34%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  +V  +  + +G ++AS S D  I LW   G +C     + GH + +  +    +G  I+SAS DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   +++S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/187 (26.74%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WDV TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 47/186 (25.27%), Postives = 89/186 (47.85%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  +V  +  + +G ++ S S D  I LW   G +C     + GH + +  +    +G  ++SAS DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   +++S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/187 (26.74%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WDV TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 49/186 (26.34%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  +V  +  + +G ++AS S D  I LW   G +C     + GH + +  +    +G  I+SAS DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   +++S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 49/187 (26.20%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WD+ TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDFKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 49/186 (26.34%), Postives = 88/186 (47.31%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  +V  +  +  G ++AS S D  I LW   G +C     + GH + +  +    +G  I+SAS DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   + +S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/187 (26.74%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQ--------------------IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            +   TGH+  V  ++ N  GT+IAS S+D+ + +W V   +CK    L+ H++ +  + W  + S                     ++S S DKT++ WDV TG  +  +  H+++V        G   ++S +DD T ++WD + +  ++T    ++ +T++ F   +  + TG +D  VKVW+ R
Sbjct:  227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410          

HSP 2 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 49/186 (26.34%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---------DMRQRGAIQ---TFPDKYQITAVSFSDASE---------*IYTGGIDNDVKVWDLRKG 697
            L GH  +V  +  + +G ++AS S D  I LW   G +C     + GH + +  +    +G  I+SAS DKT++ W+V+TG  +K    H  +V    P++ G  L+ S S+D T ++W         ++R+   +    ++  +   +++S +  SE          + +G  D  +K+WD+  G
Sbjct:  146 LKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  203 LLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD-GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            +L  H   +  + +N +G+   +GS+DR   LW      +    L+GH+N +  + +    G +I + S DKT + W VETGK       H + +  C        LV +GS D TAKLWD++    + T      +I ++SF+ + + I TG  D+ V VWD   G
Sbjct:   87 VLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDT-ASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTG 251          

HSP 2 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 46/169 (27.22%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  197 IMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            +  L GH + + ++  N +G  I +GS D  + +W      K   +L GH   I    +  D S I++ S DKT + WD   GK +  +  H+  +   C    G  L+ + S DGTA+++    R  I      + +I+ +SF+     + TG  D   ++WD + G+
Sbjct:  212 VYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRK-VNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTG-KLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQ 378          

HSP 3 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 48/168 (28.57%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVN-PAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            L GH++ VY +  N P G  IA+GS D+   LW V  G C  +   +GH   I+ L +    + + + S D T + WD++ G+++  +  H++ + S   +  G   +++GS D T  +WD      +        +I++ SF+     I TG +D   K+WD   G+
Sbjct:  130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSG-DRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGK 294          

HSP 4 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  212 GHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 589
            GH + +  +  NP  T++A+GS D    LW +    +    L+GH   I+ L + T G +II+ S D T+  WD +TG+++  +  H + ++S         L+++GS D T KLWD      + T
Sbjct:  175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNG-EEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISS-ASFNWDCSLILTGSMDKTCKLWDATNGKCVAT 298          

HSP 5 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 37/126 (29.37%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  326 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700
            F VLK H   + ++     GS  I+ S D+T + WD  +G+++  +  H + V +   +      + +GS D T KLW +       TF     +I  +SF+  S  + TG +D   K+WD++ GE
Sbjct:   85 FKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGE 210          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
PRP19_MOUSE3.397e-1528.32Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
LIS1_RAT3.397e-1526.74Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_PONAB3.397e-1526.74Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_PIG3.397e-1526.74Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MOUSE3.397e-1526.74Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MACFA3.397e-1526.74Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_HUMAN3.397e-1526.74Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_CHICK3.397e-1526.20Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_BOVIN3.397e-1526.74Platelet-activating factor acetylhydrolase IB subu... [more]
WDR69_HUMAN4.436e-1531.14WD repeat-containing protein 69 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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