FC929858

Overview
NameFC929858
Unique NameFC929858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: UTP15_RAT (U3 small nucleolar RNA-associated protein 15 homolog OS=Rattus norvegicus GN=Utp15 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 44/170 (25.88%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            + P+   +  +   Y       G ++ +GS D  + L+ + G        +GH  A+  + +T D   ++S + D T++ WD+   K+I    EH+ +V   C S+  P L V+GS D T K++D R    +        + +V    +   + + G    VKVWD+ KG
Sbjct:   70 QEPVKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAP-LRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSAG-GRYVKVWDMLKG 237          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: UTP15_BOVIN (U3 small nucleolar RNA-associated protein 15 homolog OS=Bos taurus GN=UTP15 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 44/170 (25.88%), Postives = 79/170 (46.47%), Query Frame = 2
Query:  188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            + PI   +  +   Y       G ++ +GS D  + L+ + G        +GH  A+  + +T D   ++S + D T++ WD+   K+I    EH+ +V   C S+    L V+GS D T K++D R   ++ +      + +V    +   + + G    VKVWD+ KG
Sbjct:   70 QEPIKTFSRFKDTAYCATFRQDGRLLVAGSEDGGVQLFDISGRAP-LRQFEGHTKAVHSVDFTADKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNTDLFVTGSYDHTVKMFDARTNQSVISVEHGQPVESVLLFPSGGLLVSAG-GRYVKVWDMLKG 237          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 49/179 (27.37%), Postives = 81/179 (45.25%), Query Frame = 2
Query:  176 TSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI-KKMAEHNSFVNSCC--PSRRGPP--LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKG 697
            TSSLE       GH  AV ++  +P G  +ASGS D  +  W +  +  +F   +GH++ +L + W+ DG ++ S   +  +  WD  TGKQ+ + +  H+ ++ +    P    P    V S S DG+ ++WD       +T     Q            +Y+   D  +KVW    G
Sbjct:  107 TSSLE-------GHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHF-TCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQSVTCLRWGGDGLLYSASQDRTIKVWRAHDG 277          

HSP 2 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 2
Query:  263 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASE*IYTGGIDNDVKVW 682
            + SGS D  +FLW    D K    + GH+  I  + ++ D   I SAS DK+++ WD  TGK +  +  H + V     S     L+VSGS D T K+WD++ +      P    ++ AV +S   + + +GG D  +++W
Sbjct:  344 LVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          

HSP 3 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 2
Query:  188 ESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 559
            + P+  +TGHQ+ +  +  +P   VIAS S D+ I LW      K    L+GH  A+  + W+ D   ++S S D TL+ WDV+  K    +  H   V +   S  G   V SG  D   ++W
Sbjct:  362 KKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTG-KYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPDG-QRVASGGKDKCLRIW 483          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAG-TVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV------SFSDASE*IYTGGIDNDVKVWDLRK 694
            L GH   V ++  +     ++ S S D+ +  W + GD + F V     KGH + + D   T DG+  +SAS DKTLR WDV TG+  ++   H S V S    ++   +++SGS D T K+W ++ +           ++ V         D S  I + G D  VK W+L +
Sbjct:   13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 50/171 (29.24%), Postives = 84/171 (49.12%), Query Frame = 2
Query:  200 MLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            +++  H  AVY    +  G  IAS   D+ + ++      K  + +K H++ +L   +++D S I + S DK ++ WD  TGK +    EH+  VN C   ++    L+ +GS+D   KLWD+ Q+    T F     +T   FS   E + +   D  +K+WD+R    K
Sbjct:  609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKECRNTMFGHTNSVTHCRFSPDDELLASCSADGTLKLWDVRSANEK 778          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +       ++AS   DR IFLW V+         +      L G+K++I  L     G+ I+S S +K LR WD  T  ++ K+  H   V +   +R G    +SGS DGT +LW + Q+  I T+    + + A+  +DA   +Y+GG D  +   DLR
Sbjct:  113 LRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQ-CLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +       ++AS   DR IFLW V+         +      L G+K++I  L     G+ I+S S +K LR WD  T  ++ K+  H   V +   +R G    +SGS DGT +LW + Q+  I T+    + + A+  +DA   +Y+GG D  +   DLR
Sbjct:  113 LRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQ-CLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +       ++AS   DR IFLW V+         +      L G+K++I  L     G+ I+S S +K LR WD  T  ++ K+  H   V +   +R G    +SGS DGT +LW + Q+  I T+    + + A+  +DA   +Y+GG D  +   DLR
Sbjct:  113 LRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQ-CLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH--------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLR 691
            L  H+  V  +       ++AS   DR IFLW V+         +      L G+K++I  L     G+ I+S S +K LR WD  T  ++ K+  H   V +   +R G    +SGS DGT +LW + Q+  I T+    + + A+  +DA   +Y+GG D  +   DLR
Sbjct:  113 LRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQ-CLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282          
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: NUDF_USTMA (Nuclear distribution protein PAC1 OS=Ustilago maydis GN=PAC1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 55/191 (28.80%), Postives = 83/191 (43.46%), Query Frame = 2
Query:  206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-------RG-----AIQTFPDKYQITAV--------------SFSDASE*IYTGGIDNDVKVWDLRKGE 700
            L GH  AV  +  +  G  + S S D  I +W  + D KN   L+GH +++  + +      I+SAS DKT++ W+  TG   K +  H  +V S  PS     L VS S D TA++WD+         RG      +  F       A+              S S A + + TG  D  +++WD   G+
Sbjct:  160 LKGHTKAVQDVDFDSKGNYVLSCSSDLSIKVWDANNDYKNIKTLQGHDHSVSSVRFLPGDDYIVSASRDKTIKIWEFSTGFCTKTLQGHAEWVRSAIPSDDAKWL-VSCSTDQTARVWDVSSGETKVELRGHEHVVEVAIFAPVASYAAIRQLASLDPNASKDASASMAGQFVATGSRDKTIRIWDSISGQ 349          

HSP 2 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 63/234 (26.92%), Postives = 108/234 (46.15%), Query Frame = 2
Query:   14 RAHLSSIVPEGNMEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASE*IYTGGIDNDVKVWDLRKGESK 706
            RA  + ++ +    V+  Q++     S +S    E S  P SA ++   N     +S  S    + GH+  V  +  +P  + IAS S D  + LW    GD +    LKGH  A+ D+ + + G+ ++S S D +++ WD     K IK +  H+  V+S      G   +VS S D T K+W+       +T     + + +   SD ++ + +   D   +VWD+  GE+K
Sbjct:   57 RAKYAGLLEKKWTSVIRLQKKIMEMESRISQLQEELSAAP-SAKRSASLNDWLPAAS--SARHTMQGHRLPVTKVSFHPVFSQIASASEDTTVKLWDWETGDFER--TLKGHTKAVQDVDFDSKGNYVLSCSSDLSIKVWDANNDYKNIKTLQGHDHSVSS-VRFLPGDDYIVSASRDKTIKIWEFSTGFCTKTLQGHAEWVRSAIPSDDAKWLVSCSTDQTARVWDVSSGETK 284          
The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
UTP15_RAT6.406e-1425.88U3 small nucleolar RNA-associated protein 15 homol... [more]
UTP15_BOVIN6.406e-1425.88U3 small nucleolar RNA-associated protein 15 homol... [more]
NLE1_BOVIN6.406e-1427.37Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]
GBLP_YEAST6.406e-1430.46Guanine nucleotide-binding protein subunit beta-li... [more]
APAF_RAT6.406e-1429.24Apoptotic protease-activating factor 1 OS=Rattus n... [more]
WDR48_PONAB8.366e-1430.99WD repeat-containing protein 48 OS=Pongo abelii GN... [more]
WDR48_MACFA8.366e-1430.99WD repeat-containing protein 48 OS=Macaca fascicul... [more]
WDR48_HUMAN8.366e-1430.99WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
WDR48_BOVIN8.366e-1430.99WD repeat-containing protein 48 OS=Bos taurus GN=W... [more]
NUDF_USTMA8.366e-1428.80Nuclear distribution protein PAC1 OS=Ustilago mayd... [more]

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Properties
Property NameValue
Genbank descriptionC34001B10EF PostHarvC1 Citrus clementina cDNA clone C34001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bp
AACAAGAAGAAATCGAGCTCATTTGTCCAGCATAGTACCAGAGGGAAATA
TGGAAGTTGTTACACACCAAAGAGAGAATGAAAATGCTTTGTCTACTGTT
AGTGCAAGGCCAATGGAATGGTCTACAGTCCCATATAGTGCTCCCCAAGC
TCCAGGTCCAAATGGAAAGCAGAGAACATCAAGTTTAGAATCACCGATTA
TGTTGCTGACAGGCCATCAGAGTGCTGTATATACCATGAAGGTCAATCCA
GCAGGAACGGTGATTGCTTCTGGATCTCACGACAGAGACATCTTCCTTTG
GCATGTGCATGGGGATTGCAAAAATTTCATGGTTCTGAAGGGGCATAAGA
ATGCAATTCTGGATCTTCACTGGACAACTGACGGGTCCCAGATAATATCA
GCCAGCCCGGACAAAACTCTGCGGGCCTGGGATGTTGAAACCGGAAAACA
GATTAAAAAGATGGCAGAGCACAACTCTTTTGTCAATTCTTGCTGCCCTT
CTCGGAGAGGACCGCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCT
AAACTTTGGGATATGCGTCAGAGGGGTGCTATCCAAACATTTCCAGATAA
ATACCAGATCACAGCTGTCAGTTTCTCCGATGCTTCTGAATAAATCTACA
CTGGTGGCATAGACAATGACGTCAAGGTTTGGGACTTGCGTAAAGGTGAA
AGTAAGCAT
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