FC929863

Overview
NameFC929863
Unique NameFC929863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:76..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 73/183 (39.89%), Postives = 103/183 (56.28%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR----YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            FE +L K  K Y++  EK  RF+IF+ NL  I   N  + T +  +N+F+DL+ EE  S + G        SL  +  N      L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+ +DCD   N GC+GGL+  AFE  ++ GG+  E DYPY+
Sbjct:   28 FEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGL-------SLPHQTQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCD-RVNAGCDGGLLHTAFESAMEMGGVQMESDYPYE 202          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 72/183 (39.34%), Postives = 105/183 (57.38%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            FE+++  + K Y +  EK KR+ IFK+NL  I+  N         TYK+  N+F+DL+  E  +   G     + ++          P  G   P   DWR++  V  +K+QG+CG+CWAF+T+A+VE    +    LI LSEQ+L+DCD S + GCNGGL+  AFE I+  GG+ TE DYP+
Sbjct:   56 FESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKI--NKFSDLSKSELIAKFTGLSIPERVSNFCKTIILNQPPDKG---PLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCD-SVDMGCNGGLLHTAFEEIMRMGGVQTELDYPF 232          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  429 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            P SVDWR+KG V  VKDQG CGSCWAFST  A+EG +    G L+SLSEQ LVDC     N+GCNGGLMD AF+++ DNGGID+EE YPY
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSRPEGNQGCNGGLMDQAFQYVQDNGGIDSEESYPY 91          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 3
Query:  429 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            P+S+DWR KGAV  VK+Q  CGSCWAFST+A VEGINKI TG LISLSEQEL+DCD   + GC GG    + +++ DNGG+ TE++YPY+
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR-SHGCKGGYQTGSIQYVADNGGVHTEKEYPYE 90          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 70/180 (38.89%), Postives = 102/180 (56.67%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEAL-PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            FE ++ ++ K Y++  EK+ R+ IF+ N+  I+  NS N +    +NRFAD+T  E  + H G   G    +         +   G+   P + DWR    V  VKDQG CG+CWAF+ + A+E    I    LI L+EQ+LVDCD   + GC+GGL+  A+E I+  GG++ E DYPYK
Sbjct:   40 FEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLASGDIGANFCE---TIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCD-FVDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYK 215          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 73/198 (36.87%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  144 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN------------RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEA-LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            D+    F+ +L ++ K+Y+   E + R+ +FK+NL  I+  N EN             + + G+N+F+D T +E   +H    F    +   +   NR +    +  LPD  DWR    V  +KDQG CGSCWAF  I  +E    I    LI LSEQ+L+DCD   + GCNGGLM  AF+ ++  GG++TE DYPY+
Sbjct:   51 DQSEIYFKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEV--LHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD-EVDLGCNGGLMHLAFQELLLMGGVETEADYPYQ 245          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  141 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            D ++ A ++ W  K+ K+Y+   E  +R  +++EN+R I  HN EN      + + +N+F D T+EE+R         A  T   ++        V   LPD  DWR++G V  V++QG CGSCWAF+   A+EG     TG+L  LS Q L+DC  T  N+GC  G    AFE+++ N G++ E  YPY+
Sbjct:   22 DPKLDAEWKDWKTKYAKSYSPKEEALRR-AVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQN------HVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLEAEATYPYE 205          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 70/184 (38.04%), Postives = 107/184 (58.15%), Query Frame = 3
Query:  159 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLP---RVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            +F+ ++  + + Y +  E + R  +F  N+    +  + +R T + G+ +F+DLT EE+ +++L          L  K S R +     + +  P   DWRKKGAV EVK+QG CGSCWAFS    VEG   +  G+L+SLSEQEL+DCD   ++ C GGL   A+  I + GG++TE+DY Y+
Sbjct:  164 LFKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLNP--------LLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD-KVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQ 338          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 67/178 (37.64%), Postives = 100/178 (56.18%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            FE +L  + K YN   EKE+RF IF++ L  I+  N  N +    +N+FADL+  E  S + G     + T+          P  G   P + DWR++  V  +K+Q +CG+CWAF+T+A++E    I     I LSEQ+++DCD   + GC+GGL+  AFE +I  G +  E +YPY
Sbjct:   31 FETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKG---PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCD-YVDMGCDGGLLHTAFEQMIQMGELVQEHEYPY 204          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 70/179 (39.11%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            FE ++ +  K Y +  EK +RF+IF+ NL  I   N +N + K  +N+F+DL+ +E  + + G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY+
Sbjct:   28 FEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLSLPIQTQNFCKVIVLDQPPGKG---PLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYE 201          
The following BLAST results are available for this feature:
BLAST of FC929863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATV_NPVOP1.183e-2839.89Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATV_NPVLD1.545e-2839.34Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATL1_CHICK1.545e-2865.56Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
MEX2_JACME2.018e-2862.22Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATV_NPVMC2.635e-2838.89Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATV_NPVHZ2.635e-2836.87Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATJ_MOUSE2.635e-2836.65Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATF_MOUSE4.495e-2838.04Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATV_NPVBS1.001e-2737.64Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATV_NPVAC1.001e-2739.11Viral cathepsin OS=Autographa californica nuclear ... [more]

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Properties
Property NameValue
Genbank descriptionC34001C04EF PostHarvC1 Citrus clementina cDNA clone C34001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929863 ID=FC929863; Name=FC929863; organism=Citrus clementina; type=EST; length=706bp
TTCTCAAAAGATGGGNTTTGTTTAGATCACCAACCATGGCCATGTTTTTA
CTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTA
TGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGG
TTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAAC
GCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAG
GTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGA
ACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGT
GCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCG
TTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGA
AGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGC
TGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTAC
AGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACAT
CATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTC
ATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAGCC
ATTGAT
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