FC929863

Overview
NameFC929863
Unique NameFC929863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:76..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 63/138 (45.65%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  282 TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            ++++ +N   D+T+EE      G R    R          Y+P      P +VDWR+KG V  VKDQG CGSCWAFS++ A+EG  K  TG L+SLS Q LV C  S N GC GG M  AFE++  N GID+E+ YPY
Sbjct:   75 SFQLAMNYLGDMTSEEVVRTMTGLRVPRSRPR---PNGTLYVPDWSSRAPAAVDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYC-VSNNNGCGGGYMTNAFEYVRLNRGIDSEDAYPY 208          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  426 LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            +P SVDW KKG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVD      N+GCNGGLMD AF++I +NGG+D+EE YPY+
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRPQGNQGCNGGLMDNAFQYIKENGGLDSEESYPYE 92          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 71/186 (38.17%), Postives = 107/186 (57.53%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNR-FADLTNEEYRSMHLGARFGAKRTSLKSKRS---NRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG---INKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            F  W  K+ K + A+ EK +R  IF  N +F+D  N    ++K+ ++  FA +TNEEYR++            LKSKR+   N  +  +    P+SVDWRK+G V  ++DQ  CGSC+ F ++AA+EG   I K    + + LSE+ +V C   + N GCNGGL    +++II++ G+  E DYPY
Sbjct:   16 FNTWASKNNKHFTAI-EKLRRRAIFNMNAKFVDSFNKIG-SFKLSVDGPFAAMTNEEYRTL------------LKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMVQCTRDNGNNGCNGGLGSNVYDYIIEH-GVAKESDYPY 186          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 76/194 (39.18%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  135 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKR--SNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            R  +++   ++ ++   GK Y+   E   R  IF+ N    +  N +      +Y   LN  ADLT+EE+   + G R    +T L+ KR  S  Y     E LPD VDWR KGAV  V++QG CGSC+AF+T AA+E  +K +TG L+ LS Q +VDC  +  N GC+GG M  AF++     GI  E  YPY
Sbjct:   82 RAMEKLETEWKDYVTALGKHYDQK-ENNFRMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEFMVRN-GLRL-PNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQY-ASRYGIAMESRYPY 271          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 72/183 (39.34%), Postives = 103/183 (56.28%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNR-FADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG---INKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            F  W+  + K + A+ E  +R  IF  N R + E+N +  T+K+ ++  FA +TNEEY S+    R G ++  +      RYL       P +VDWRKKG V  ++DQG+CGSC+ F +IAA+EG   I K      + LSE+ +V C     N GCNGGL    + +I++N GI  E DYPY
Sbjct:   16 FNTWVANNNKHFTAV-ESLRRRAIFNMNARIVAENNRKE-TFKLSVDGPFAAMTNEEYNSLLKLKRSGEEKGEV------RYL---NIQAPKAVDWRKKGKVTPIRDQGNCGSCYTFGSIAALEGRLLIEKGGDSETLDLSEEHMVQCTREDGNNGCNGGLGSNVYNYIMEN-GIAKESDYPY 186          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 71/186 (38.17%), Postives = 104/186 (55.91%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNR-FADLTNEEYRSMHLGARFGAKRTSLKSKRS---NRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG---INKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            F  W   + K + A+ E  +R  IF  N RF+ E N +  ++K+ ++  FA +TNEEYR++            LKSKR+   N  +  +    P+SVDWR +G V  ++DQ  CGSC+ F ++AA+EG   I K    + + LSE+ LV C   + N GCNGGL    +++II N G+  E DYPY
Sbjct:    9 FNTWAANNNKHFTAV-EALRRRAIFNMNARFVAEFNKKG-SFKLSVDGPFAAMTNEEYRTL------------LKSKRTVEENGKVTYLNIQAPESVDWRAQGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTRDNGNNGCNGGLGSNVYDYIIQN-GVAKESDYPY 179          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 69/185 (37.30%), Postives = 105/185 (56.76%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNR-FADLTNEEYRSMHLGARFGAKRTSLKSKRS---NRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG---INKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            F  W  K+ K + A+ EK +R  IF  N +F+D  N    ++K+ ++  FA +TNEEYR++            LKSKR+   N  +  +    P+SVDWRK+G V  ++DQ  CGSC+ F ++AA+EG   I K    + + LSE+ +     + N GCNGGL    +++II++ G+  E DYPY
Sbjct:   12 FNTWASKNNKHFTAI-EKLRRRAIFNMNAKFVDSFNKIG-SFKLSVDGPFAAMTNEEYRTL------------LKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPLRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMQCTRDNGNNGCNGGLGSNVYDYIIEH-GVAKESDYPY 181          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 65/196 (33.16%), Postives = 114/196 (58.16%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSM---------HLGARFGAKRTSLKSKRSNRYLPRVGEA-----LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGI-NKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKPL 704
            F  ++ K+ ++Y  + E+ ++++ FK N   I +HN  N+ YK+ +N+F+D + +++ S          HL  ++    +S+ + +    +     A     +P+ +D+R+KG V E KDQG CGSCWAF+++  VE +  K    ++++LSEQE+VDC +  N GC+GG   Y+F + I+N GI   +DY YK +
Sbjct:  237 FFNFMNKYKRSYKDINEQMEKYKNFKMNYLKIKKHNETNQMYKMKVNQFSDYSKKDFESYFRKLVPIPDHLKKKYVVPFSSMNNGKGKNVVTSSSGANLLADVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNVECMYAKEHNKTILTLSEQEVVDC-SKLNFGCDGGHPFYSFIYAIEN-GICMGDDYKYKAM 430          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 65/212 (30.66%), Postives = 117/212 (55.19%), Query Frame = 3
Query:  123 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLK--------SKRSNRYLPRVGEA------------LPDSVDWRKKGAVAEVKDQGS-CGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            +S   ++ +++  F+A++ K+ K + +  ++ +RF  F++N   +  H      Y + LN+F+DL++EE+++++         TSL         S ++  Y+ ++ +A              ++++W +  AV+ +KDQG  CGSCWAFS+IA+VE + ++       LSEQELV+CD S + GC GGL   A E+ I + G+  E + PY
Sbjct:  107 TSDAESELDMLIEFDAFVEKYKKVHRSFDQRVQRFLTFRKNYHIVKTHKP-TEPYSLDLNKFSDLSDEEFKALYPVITPPKTYTSLSKHLEFKKMSHKNPIYISKLKKAKGIEEIKDLSLITGENLNWARTDAVSPIKDQGDHCGSCWAFSSIASVESLYRLYKNKSYFLSEQELVNCDKS-SMGCAGGLPITALEY-IHSKGVSFESEVPY 315          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 64/202 (31.68%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHN--SENRTYKVGLNRFADLTNEEYRSM---------------------HLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            F  ++ +H K Y  + E+ ++FEIFK N   I  HN  ++N  YK  +N+F+D + EE +                       HL             KR+ +    +   +P+ +D+R+KG V E KDQG CGSCWAF+++  +E +      +++S SEQE+VDC    N GC+GG   Y+F +++ N  +   ++Y YK
Sbjct:  225 FFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEK---DIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSKD-NFGCDGGHPFYSFLYVLQN-ELCLGDEYKYK 421          
The following BLAST results are available for this feature:
BLAST of FC929863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATK_CHICK2.467e-2645.65Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CATL1_SHEEP7.177e-2660.87Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CPP2_ENTHI9.373e-2638.17Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CATL_BRUPA1.224e-2539.18Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CPP1_ENTHI2.727e-2539.34Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]
CPP3_ENTHI6.075e-2538.17Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
ACP2_ENTHI1.353e-2437.30Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CYSP_PLAVS3.938e-2433.16Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
CYSP_THEAN2.822e-2230.66Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
CYSP_PLAFA2.822e-2231.68Trophozoite cysteine proteinase OS=Plasmodium falc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001C04EF PostHarvC1 Citrus clementina cDNA clone C34001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929863 ID=FC929863; Name=FC929863; organism=Citrus clementina; type=EST; length=706bp
TTCTCAAAAGATGGGNTTTGTTTAGATCACCAACCATGGCCATGTTTTTA
CTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTA
TGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGG
TTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAAC
GCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAG
GTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGA
ACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGT
GCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCG
TTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGA
AGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGC
TGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTAC
AGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACAT
CATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTC
ATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAGCC
ATTGAT
back to top