FC929863

Overview
NameFC929863
Unique NameFC929863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:76..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 61/188 (32.45%), Postives = 105/188 (55.85%), Query Frame = 3
Query:  147 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKR--SNRYLPRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            E+  +F+ + ++  ++Y    E  +R  IF  NL        E+  T + G   F+DLT EE+  ++ G     +RT   +K+  SN +    GE++P + DWRK K  ++ VK+QGSC  CWA +    ++ + +I     + +S QEL+DC+   N GCNGG +  A+  +++N G+ +E+DYP++
Sbjct:   35 ELKEVFKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLY-GQERSPERTPNMTKKVESNTW----GESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGN-GCNGGFVWDAYLTVLNNSGLASEKDYPFQ 216          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 66/186 (35.48%), Postives = 101/186 (54.30%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPD-------SVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            FE W +K+ K Y    EK  R EI+  N R I+EHN  E+ TY++G N+F  L++EE+  ++L             ++S+  +  +G +LP+       +VDWR       VK+QG C S WAFS   ++E    I     I+ S Q++VDCD + N GC+GG   YA E+++   G+ +  +YPY
Sbjct:   29 FERWALKNNKFYTE-SEKLYRMEIYNSNKRMIEEHNQREDVTYQMGENQFMTLSHEEFVDLYL-------------QKSDSSVNIMGASLPEVQLEGLGAVDWRN---YTTVKEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDCDYN-NTGCSGGYNAYAMEYVL-RVGLVSSTNYPY 195          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 63/200 (31.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:  147 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL-----GARFGAKRTSLKSKRSNRYLPRVGEALP------------DSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            EV   FE +  K+ + +    E+  R   F+ N   + E   +   Y  G+NRF+DLT  E+  +        A +      L    +  YL  + +AL             +++DWR+  +V  VKDQ +CG CWAFST+ +VEG           LS QEL+DCD S++ GC GGL++ A+E+ +   G+ + +D P+
Sbjct:  120 EVYREFEEFNSKYNRRHATQQERLNRLVTFRSNYLEVKEQKGDE-PYVKGINRFSDLTEREFYKLFPVMKPPKATYSNGYYLLSHMANKTYLKNLKKALNTDEDVDLAKLTGENLDWRRSSSVTSVKDQSNCGGCWAFSTVGSVEGYYMSHFDKSYELSVQELLDCD-SFSNGCQGGLLESAYEY-VRKYGLVSAKDLPF 316          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 63/201 (31.34%), Postives = 106/201 (52.74%), Query Frame = 3
Query:  126 SSWRTDD------EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYL--PRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            SS R+ D      E+   F  + +++ ++Y+   E  +R +IF  NL    +   E+  T + G+  F+DLT EE+     G  +G +R   ++ +  R +     GE++P + DWRK  G ++ VK Q SC  CWA +    +E +  I     + LS QEL+DC     +GC GG +  AF  +++N G+ +E+DYP++
Sbjct:   24 SSLRSQDPGPQPLELKQAFTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEF-----GRLYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDCGRC-GDGCRGGFVWDAFITVLNNSGLASEKDYPFQ 218          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  423 ALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            A+P S+DWR  GAV  VK+Q  CG+CWAF+ IA VE I KI  G L  LSEQ+++DC   Y  GC GG    AFEFII N G+ +   YPYK
Sbjct:    1 AVPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDCAKGY--GCKGGWEFRAFEFIISNKGVASGAIYPYK 90          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 69/210 (32.86%), Postives = 107/210 (50.95%), Query Frame = 3
Query:  120 KSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS----ENRTYKVGLNRFADLTNEEYRS---------MHLGARFGAKRTSLKSKRSNRYLPRV---GEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSL-ISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            K  S + + +  + F  ++ ++ K Y  + E+ +RFE FK       +HN        TY   +N+++D + EE+ +         M L +++      LK   +N  L  V    +  PDS D+R K      KDQG+CGSCWAF+ I   E +       + IS SEQ++VDC T  N GC+GG   YAF ++I+N G+   ++YPYK
Sbjct:  148 KLESMQDNIKYASKFFKYMKENNKKYENMDEQLQRFENFKIRYMKTQKHNEMVGKNGLTYVQKVNQYSDFSKEEFDNYFKKLLSVPMDLKSKY---IVPLKKHLANTNLISVDNKSKDFPDSRDYRSKFNFLPPKDQGNCGSCWAFAAIGNFEYLYVHTRHEMPISFSEQQMVDCSTE-NYGCDGGNPFYAFLYMINN-GVCLGDEYPYK 352          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 57/186 (30.65%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  147 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            E+   F+ + ++  ++Y +  E   R +IF  NL        E+  T + G+  F+DLT EE+  ++ G R  A       +      P   E++P S DWRK   A++ +KDQ +C  CWA +    +E + +I     + +S QEL+DC     +GC+GG +  AF  +++N G+ +E+DYP++
Sbjct:   37 ELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLY-GYRRAAGGVPSMGREIRSEEPE--ESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRC-GDGCHGGFVWDAFITVLNNSGLASEKDYPFQ 218          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 58/180 (32.22%), Postives = 96/180 (53.33%), Query Frame = 3
Query:  174 LVKHGKAYNALGEKEKRFEIFKENL---RFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFG-AKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNG-GIDTEEDYPYK 698
            L +HG A       ++     +E+L   R+++    EN T   G+N+F+ L  EE+++++LG+++  A R   + +R    +P V  +LP   DWR K  V  V++Q  CG CWAFS ++A+E    I   SL  LS Q+++DC  + N GC GG    A  ++ +    +  +  YP+K
Sbjct:   16 LGRHGVAGTWSWSHQREAAALRESLHRHRYLNSFPHENSTAFYGVNQFSYLFPEEFKALYLGSKYAWAPRYPAEGQRP---IPNV--SLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQGKSLDYLSVQQVIDCSFN-NSGCLGGSPLCALRWLNETQLKLVADSQYPFK 189          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            FE +     K Y  + E+E   + F E+L++++ +       K  +N  +DL+ +E+++ +L     F   +T                 +P  +D R    V  ++ QG CGSCWAFS +AA E        + + LSEQELVDC + +  GC+G  +    E+I  NG ++ E  YPY
Sbjct:   26 FEEFKKAFNKNYATVEEEEVARKNFLESLKYVEAN-------KGAINHLSDLSLDEFKNRYLMSAEAFEQLKTQFDLNAETSACRINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH--GCHGDTIPRGIEYIQQNGVVE-ERSYPY 195          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 3
Query:  213 KEKRFEIFKENL---RFIDE-HNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIID-NGGIDTEEDYPYK 698
            +E+    F+E+L   R+++    SEN T   G+N+F+ L  EE+++++L ++    +    S   +  +P V  +LP   DWR K  V +V++Q  CG CWAFS + AVE    I    L  LS Q+++DC  SYN  GCNGG    A  ++      +  + +YP+K
Sbjct:   37 REREAAAFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSK--PSKFPRYSAEVHMSIPNV--SLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDC--SYNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFK 198          
The following BLAST results are available for this feature:
BLAST of FC929863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATW_MOUSE2.389e-2132.45Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATL3_PARTE3.120e-2135.48Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
CYSP_THEPA6.951e-2131.50Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]
CATW_FELCA6.951e-2131.34Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
BROM2_ANACO9.078e-2154.35Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP_PLAVN1.712e-1932.86Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CATW_HUMAN3.814e-1930.65Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATO_MOUSE6.089e-1732.22Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
PEPT1_DERFA3.022e-1630.00Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CATO_HUMAN1.959e-1533.93Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34001C04EF PostHarvC1 Citrus clementina cDNA clone C34001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929863 ID=FC929863; Name=FC929863; organism=Citrus clementina; type=EST; length=706bp
TTCTCAAAAGATGGGNTTTGTTTAGATCACCAACCATGGCCATGTTTTTA
CTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTA
TGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGG
TTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAAC
GCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAG
GTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGA
ACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGT
GCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCG
TTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGA
AGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGC
TGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTAC
AGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACAT
CATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTC
ATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAGCC
ATTGAT
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