FC929863

Overview
NameFC929863
Unique NameFC929863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:76..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = 3
Query:   54 FLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGA--RFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYK 698
            F+  ++S L +S+V       +  S  RT +E    F     KH     A  E  + F    E++          +  K  +N+F+D++ EE+++ +L +   + A +         +        +P+ +D R  G V ++K+Q +CGSCWAFS +A VE          + LSEQELVDC + +  GC G  +     +I  NG ++ E+ YPYK
Sbjct:    3 FVLAIASLLVLSVVY------AYPSEIRTFEEFKKAFN----KHYVTPEAEQEARQNFLASLEHIE---------KAGKGRINQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVNIPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVESNYLSYDNVSLDLSEQELVDCASQH--GCGGDTVLNGLRYIQKNGVVE-EQSYPYK 197          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP3_CARCN (Cysteine proteinase 3 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  429 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 554
            P+S+DWRKKGAV  VK+QGSCGSCWAFSTIA VEGINKIV G
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIATVEGINKIVHG 43          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 52/180 (28.89%), Postives = 83/180 (46.11%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            FE +     K Y    ++E   + F E+L++++ +       K  +N  +DL+ +E+++  L     F   +T                +LP  +D R    V  ++ QG CGSCWAFS +A+ E          + L+EQELVDC  +   GC+G  +    E+I  NG +  E  YPY
Sbjct:   26 FEEFKKAFNKTYATPEKEEVARKNFLESLKYVESN-------KGAINHLSDLSLDEFKNQFLMNANAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC--ASQNGCHGDTIPRGIEYIQQNGVVQ-EHYYPY 195          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  429 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 554
            P+S+DWRKKGAV  VK+QGSCGSCWAFSTI  VEGINKI TG
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRTG 43          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 3
Query:  429 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 554
            P SVDWR+KGAV  VKDQ  CGSCWAFST+A VEGINKIVTG
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVTG 43          
BLAST of FC929863 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 51/180 (28.33%), Postives = 83/180 (46.11%), Query Frame = 3
Query:  162 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 695
            FE +     K+Y    ++E   + F E+++++  +          +N  +DL+ +E+++  L     F   +T              G A P  +D R+   V  ++ QG CGSCWAFS +AA E          + L+EQELVDC + +  GC+G  +    E+I  NG +  E  Y Y
Sbjct:   26 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNA-PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH--GCHGDTIPRGIEYIQHNGVVQ-ESYYRY 194          
The following BLAST results are available for this feature:
BLAST of FC929863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PEPT1_PSOOV1.658e-1428.57Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
CYSP3_CARCN2.166e-1483.33Cysteine proteinase 3 (Fragment) OS=Carica candama... [more]
PEPT1_EURMA2.829e-1428.89Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
CYSP4_CARCN6.302e-1480.95Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN1.075e-1380.95Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
PEPT1_DERPT1.404e-1328.33Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]

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Properties
Property NameValue
Genbank descriptionC34001C04EF PostHarvC1 Citrus clementina cDNA clone C34001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929863 ID=FC929863; Name=FC929863; organism=Citrus clementina; type=EST; length=706bp
TTCTCAAAAGATGGGNTTTGTTTAGATCACCAACCATGGCCATGTTTTTA
CTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTA
TGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGG
TTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAAC
GCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAG
GTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGA
ACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGT
GCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCG
TTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGA
AGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGC
TGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTAC
AGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACAT
CATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTC
ATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAGCC
ATTGAT
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